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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 9-Feb-2023 number of released structures: 12635
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NDB ID:
6BJX
PDB ID:
6BJX
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
40
A_A133:U190_A
0.103
-0.075
0.131
-0.941
-14.343
4.639
1
43
A_A136:U182_A
-0.019
-0.061
-0.57
-7.688
-13.273
-3.476
1
46
A_A139:G164_A
-6.554
-5.022
0.874
-13.21
25.773
-1.755
1
47
A_A140:G163_A
-6.737
-3.731
-0.303
8.101
-11.704
1.471
1
53
A_A146:U157_A
0.275
-0.225
-0.026
1.952
-11.117
2.574
1
7
A_A206:A114_A
6.319
-4.439
0.427
25.054
15.449
-16.121
1
8
A_A207:A113_A
-6.504
-4.09
-0.085
-4.764
-16.83
-14.876
1
14
A_A214:U107_A
0.479
-0.228
-0.351
2.915
4.726
6.733
1
23
A_A226:U249_A
-0.276
-0.101
-0.308
-25.25
26.633
-13.135
1
27
A_A230:U244_A
-0.115
-0.155
0.448
6.691
-3.373
-1.252
1
28
A_A231:U243_A
0.192
-0.21
0.135
-2.715
-9.444
-1.49
1
30
A_A233:U241_A
-0.091
0.055
0.214
-7.535
-11.965
1.831
1
32
A_A235:U239_A
0.272
-0.594
0.332
-2.587
-24.75
-17.788
1
22
A_A248:A151_A
1.441
1.321
-0.372
-28.202
-2.548
-179.52
1
33
A_C124:C197_A
-4.448
-1.562
1.324
-11.145
11.539
-78.576
1
35
A_C127:G195_A
0.288
0.362
-0.597
28.276
-30.178
-2.951
1
36
A_C128:G194_A
0.635
0.007
0.162
5.244
-14.117
2.555
1
39
A_C132:G191_A
0.576
-0.074
0.493
-8.346
-1.463
4.347
1
44
A_C137:G181_A
0.285
-0.177
0.043
2.116
-27.076
2.929
1
45
A_C138:G180_A
0.575
-0.36
0.102
-2.746
-6.337
-5.493
1
50
A_C143:G160_A
0.228
0.05
0.043
0.358
-11.062
2.712
1
52
A_C145:G158_A
0.536
0.078
0.303
6.425
-6.12
3.756
1
57
A_C165:G175_A
-0.467
-0.333
-0.366
-1.509
-16.209
2.022
1
58
A_C166:G174_A
0.098
-0.047
-0.054
-4.131
-13.499
0.671
1
60
A_C170:G254_B
0.421
-0.262
0.071
-13.769
2.634
-5.103
1
4
A_C203:G118_A
0.033
-0.145
-0.442
-3.835
-8.655
2.204
1
5
A_C204:G117_A
-0.06
-0.196
0.003
-9.734
-11.587
-2.649
1
9
A_C208:G112_A
-0.184
-0.082
0.25
-7.903
-8.956
3.341
1
10
A_C209:G111_A
-0.164
0.006
0.017
4.133
-5.585
-1.822
1
11
A_C211:G110_A
0.481
-0.246
-0.041
4.867
-3.686
1.134
1
13
A_C213:G108_A
0.224
-0.456
-0.432
-0.03
-8.91
0.661
1
16
A_C216:A104_A
1.594
-0.362
-0.828
30.854
-24.947
-2.674
1
17
A_C217:G103_A
1.082
-0.236
-0.509
-4.159
-16.744
3.61
1
20
A_C222:G251_A
0.84
-0.24
0.165
10.965
-20.955
1.998
1
21
A_C223:G250_A
0.238
-0.204
0.018
5.501
-9.514
-3.312
1
26
A_C229:G245_A
0.134
-0.325
0.054
3.592
-2.181
-1.813
1
29
A_C232:G242_A
0.154
-0.01
0.248
1.47
-12.277
5.35
1
67
A_C255:G169_B
0.266
-0.254
-0.65
3.797
-2.808
1.204
1
34
A_G126:A196_A
-0.319
1.737
-0.046
31.479
-11.093
-22.339
1
37
A_G129:C193_A
0.383
0.034
-0.294
-14.289
-16.24
2.84
1
41
A_G134:C189_A
-0.388
-0.138
-0.296
-16.738
-19.629
2.201
1
48
A_G141:U162_A
-2.204
-0.686
-0.13
7.022
-16.977
2.547
1
54
A_G147:U156_A
-2.295
-0.498
-0.531
-1.304
-4.231
2.837
1
55
A_G148:U155_A
-1.978
-0.105
-0.095
-6.675
-5.973
7.54
1
56
A_G149:C154_A
0.026
-0.03
-0.148
-5.003
2.634
4.634
1
61
A_G169:C255_B
-0.134
-0.002
-0.53
-3.713
-5.663
4.448
1
1
A_G200:C121_A
-0.658
-0.263
-0.201
3.486
6.044
-7.198
1
2
A_G201:U120_A
-2.368
-0.497
-0.221
-4.968
-13.193
3.831
1
12
A_G212:C109_A
0.172
-0.222
-0.76
-12.244
-13.197
-5.281
1
15
A_G215:A105_A
0.261
1.414
-0.394
20.91
0.727
-8.934
1
18
A_G220:U253_A
-2.15
-0.605
0.749
3.412
-10.242
0.505
1
24
A_G227:U247_A
-2.086
-0.492
0.007
-7.727
-9.94
0.825
1
31
A_G234:C240_A
-0.39
0.05
0.235
-6.561
-23.329
-8.352
1
66
A_G254:C170_B
-0.662
-0.136
0.211
10.736
3.466
-3.072
1
38
A_U130:A192_A
1.715
-0.411
-1.528
12.377
-42.165
-14.94
1
42
A_U135:A187_A
-0.21
3.367
0.581
-5.507
-12.646
-64.732
1
49
A_U142:A161_A
-0.159
-0.379
-0.174
3.921
-18.388
-1.49
1
51
A_U144:A159_A
0.033
0.118
0.319
3.392
-17.613
4.918
1
59
A_U167:A173_A
-0.445
3.871
0.582
-17.476
1.734
-162.93
1
62
A_U168:G188_A
-5.295
0.324
0.081
20.458
6.869
-86.028
1
3
A_U202:G119_A
1.772
-0.42
-0.211
5.229
-12.58
2.402
1
6
A_U205:G116_A
1.346
0.013
0.159
5.684
-10.354
8.134
1
19
A_U221:A252_A
0.078
-0.039
0.486
6.376
-13.225
0.244
1
25
A_U228:A246_A
-0.08
0.138
0.009
5.862
-11.369
4.244
1
68
B_A123:A198_B
3.996
0.925
1.612
7.602
37.753
-102.179
1
77
B_A133:U190_B
0.094
-0.268
0.016
-1.877
-12.039
3.875
1
80
B_A136:U182_B
0.265
-0.141
-0.531
-7.018
-13.885
-6.187
1
83
B_A139:G164_B
-6.617
-4.77
0.717
-13.462
24.825
-0.86
1
84
B_A140:G163_B
-6.901
-3.928
-0.227
9.867
-11.443
2.242
1
90
B_A146:U157_B
0.118
-0.233
0.071
2.67
-13.455
3.352
1
100
B_A206:A114_B
6.732
-4.397
-0.515
5.172
-6.511
-13.903
1
101
B_A207:A113_B
-6.62
-4.317
0.254
2.698
-12.567
-17.132
1
107
B_A214:U107_B
0.259
-0.041
-0.181
-0.624
2.773
3.148
1
120
B_A230:U244_B
-0.197
-0.267
0.47
8.841
-8.696
-1.604
1
121
B_A231:U243_B
-0.065
-0.024
-0.039
-0.839
-12.834
0.464
1
123
B_A233:U241_B
-0.372
-0.131
0.291
-3.906
-10.171
0.404
1
125
B_A235:U239_B
0.099
-0.566
0.24
-2.826
-26.065
-16.635
1
115
B_A248:A151_B
1.63
1.156
-0.253
-24.235
-1.336
-178.095
1
69
B_C121:G200_B
0.128
-0.051
-0.325
5.547
-6.611
-6.943
1
70
B_C124:C197_B
-4.6
-2.309
1.529
-4.476
-1.493
-63.774
1
72
B_C127:G195_B
0.516
0.066
-0.042
24.555
-28.523
-0.173
1
73
B_C128:G194_B
0.742
-0.289
-0.451
0.972
-10.226
3.023
1
76
B_C132:G191_B
0.827
0.327
-0.361
8.477
-7.012
4.242
1
81
B_C137:G181_B
0.148
0.002
0.229
3.094
-23.619
6.604
1
82
B_C138:G180_B
0.271
-0.063
-0.203
6.816
-9.585
-1.483
1
87
B_C143:G160_B
0.223
-0.088
0.106
3.061
-12.72
0.325
1
89
B_C145:G158_B
0.45
-0.161
0.496
4.057
-14.454
4.828
1
63
B_C165:G175_B
-0.426
-0.157
-0.037
-7.405
-10.176
3.974
1
64
B_C166:G174_B
0.006
0.091
-0.143
1.338
-12.561
2.857
1
97
B_C203:G118_B
0.297
-0.289
-0.388
6.451
-17.442
3.143
1
98
B_C204:G117_B
0.133
-0.131
0.027
-2.998
-9.801
-1.302
1
102
B_C208:G112_B
0.252
0.087
0.086
2.236
-12.185
1.891
1
103
B_C209:G111_B
-0.55
-0.183
-0.403
8.579
-2.353
-3.761
1
104
B_C211:G110_B
0.302
-0.151
-0.067
3.555
1.286
-1.756
1
106
B_C213:G108_B
0.203
-0.219
-0.116
-2.462
-8.894
2.18
1
109
B_C216:A104_B
1.101
-0.234
0.172
20.877
-16.957
-4.437
1
110
B_C217:G103_B
0.375
-0.029
-0.184
-3.176
-17.08
3.777
1
113
B_C222:G251_B
0.573
-0.139
-0.066
15.125
-18.074
-0.919
1
114
B_C223:G250_B
0.183
-0.168
-0.053
2.635
-14.669
-4.027
1
119
B_C229:G245_B
0.188
-0.374
0.011
5.219
-4.352
-2.732
1
122
B_C232:G242_B
0.305
-0.094
0.036
4.542
-11.62
2.416
1
71
B_G126:A196_B
-0.033
1.781
0.328
32.626
-13.12
-17.981
1
74
B_G129:C193_B
-0.365
-0.344
0.404
-11.022
-7.219
2.627
1
78
B_G134:C189_B
-0.576
-0.221
-0.163
-11.454
-16.044
-0.357
1
85
B_G141:U162_B
-2.546
-0.697
-0.173
7.852
-15.505
4.139
1
91
B_G147:U156_B
-1.869
-0.398
-0.453
0.795
-8.089
4.072
1
92
B_G148:U155_B
-1.893
-0.373
-0.33
-5.939
-4.96
2.637
1
93
B_G149:C154_B
-0.333
0.079
-0.396
-3.426
5.643
5.322
1
95
B_G201:U120_B
-2.578
-0.166
0.166
4.751
-6.806
5.418
1
105
B_G212:C109_B
-0.146
-0.032
-0.57
-9.18
-8.935
1.205
1
108
B_G215:A105_B
0.047
1.457
-0.212
13.576
-3.325
-15.463
1
111
B_G220:U253_B
-2.111
-0.339
0.456
1.347
-5.876
0.812
1
117
B_G227:U247_B
-2.021
-0.557
0.146
-4.122
-7.167
3.163
1
124
B_G234:C240_B
-0.523
0.124
-0.319
-10.646
-22.295
-4.028
1
75
B_U130:A192_B
0.355
-0.299
0.226
4.28
-6.622
-11.686
1
79
B_U135:A187_B
-0.039
3.386
0.464
-3.811
-19.354
-63.447
1
86
B_U142:A161_B
-0.371
-0.202
-0.06
2.423
-17.149
-1.97
1
88
B_U144:A159_B
-0.035
-0.003
0.16
6.475
-15.057
4.725
1
65
B_U167:A173_B
-0.584
4.22
0.665
-13.949
5.384
-160.095
1
94
B_U168:G188_B
-5.801
0.045
0.193
22.194
5.577
-88.49
1
96
B_U202:G119_B
2.184
-0.67
-0.086
10.476
-15.625
-2.66
1
99
B_U205:G116_B
2.184
-0.667
0.227
-3.68
-8.564
-3.675
1
112
B_U221:A252_B
-0.064
-0.208
0.387
6.606
-14.449
-1.291
1
118
B_U228:A246_B
-0.106
-0.034
-0.138
6.77
-13.216
2.06
1
116
B_U249:A226_B
0.189
-0.006
-0.316
21.015
29.547
-17.357
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.