A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 9-Feb-2023 number of released structures: 12635
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NDB ID: 6BJX  PDB ID: 6BJX 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
140A_A133:U190_A0.103-0.0750.131-0.941-14.3434.639
143A_A136:U182_A-0.019-0.061-0.57-7.688-13.273-3.476
146A_A139:G164_A-6.554-5.0220.874-13.2125.773-1.755
147A_A140:G163_A-6.737-3.731-0.3038.101-11.7041.471
153A_A146:U157_A0.275-0.225-0.0261.952-11.1172.574
17A_A206:A114_A6.319-4.4390.42725.05415.449-16.121
18A_A207:A113_A-6.504-4.09-0.085-4.764-16.83-14.876
114A_A214:U107_A0.479-0.228-0.3512.9154.7266.733
123A_A226:U249_A-0.276-0.101-0.308-25.2526.633-13.135
127A_A230:U244_A-0.115-0.1550.4486.691-3.373-1.252
128A_A231:U243_A0.192-0.210.135-2.715-9.444-1.49
130A_A233:U241_A-0.0910.0550.214-7.535-11.9651.831
132A_A235:U239_A0.272-0.5940.332-2.587-24.75-17.788
122A_A248:A151_A1.4411.321-0.372-28.202-2.548-179.52
133A_C124:C197_A-4.448-1.5621.324-11.14511.539-78.576
135A_C127:G195_A0.2880.362-0.59728.276-30.178-2.951
136A_C128:G194_A0.6350.0070.1625.244-14.1172.555
139A_C132:G191_A0.576-0.0740.493-8.346-1.4634.347
144A_C137:G181_A0.285-0.1770.0432.116-27.0762.929
145A_C138:G180_A0.575-0.360.102-2.746-6.337-5.493
150A_C143:G160_A0.2280.050.0430.358-11.0622.712
152A_C145:G158_A0.5360.0780.3036.425-6.123.756
157A_C165:G175_A-0.467-0.333-0.366-1.509-16.2092.022
158A_C166:G174_A0.098-0.047-0.054-4.131-13.4990.671
160A_C170:G254_B0.421-0.2620.071-13.7692.634-5.103
14A_C203:G118_A0.033-0.145-0.442-3.835-8.6552.204
15A_C204:G117_A-0.06-0.1960.003-9.734-11.587-2.649
19A_C208:G112_A-0.184-0.0820.25-7.903-8.9563.341
110A_C209:G111_A-0.1640.0060.0174.133-5.585-1.822
111A_C211:G110_A0.481-0.246-0.0414.867-3.6861.134
113A_C213:G108_A0.224-0.456-0.432-0.03-8.910.661
116A_C216:A104_A1.594-0.362-0.82830.854-24.947-2.674
117A_C217:G103_A1.082-0.236-0.509-4.159-16.7443.61
120A_C222:G251_A0.84-0.240.16510.965-20.9551.998
121A_C223:G250_A0.238-0.2040.0185.501-9.514-3.312
126A_C229:G245_A0.134-0.3250.0543.592-2.181-1.813
129A_C232:G242_A0.154-0.010.2481.47-12.2775.35
167A_C255:G169_B0.266-0.254-0.653.797-2.8081.204
134A_G126:A196_A-0.3191.737-0.04631.479-11.093-22.339
137A_G129:C193_A0.3830.034-0.294-14.289-16.242.84
141A_G134:C189_A-0.388-0.138-0.296-16.738-19.6292.201
148A_G141:U162_A-2.204-0.686-0.137.022-16.9772.547
154A_G147:U156_A-2.295-0.498-0.531-1.304-4.2312.837
155A_G148:U155_A-1.978-0.105-0.095-6.675-5.9737.54
156A_G149:C154_A0.026-0.03-0.148-5.0032.6344.634
161A_G169:C255_B-0.134-0.002-0.53-3.713-5.6634.448
11A_G200:C121_A-0.658-0.263-0.2013.4866.044-7.198
12A_G201:U120_A-2.368-0.497-0.221-4.968-13.1933.831
112A_G212:C109_A0.172-0.222-0.76-12.244-13.197-5.281
115A_G215:A105_A0.2611.414-0.39420.910.727-8.934
118A_G220:U253_A-2.15-0.6050.7493.412-10.2420.505
124A_G227:U247_A-2.086-0.4920.007-7.727-9.940.825
131A_G234:C240_A-0.390.050.235-6.561-23.329-8.352
166A_G254:C170_B-0.662-0.1360.21110.7363.466-3.072
138A_U130:A192_A1.715-0.411-1.52812.377-42.165-14.94
142A_U135:A187_A-0.213.3670.581-5.507-12.646-64.732
149A_U142:A161_A-0.159-0.379-0.1743.921-18.388-1.49
151A_U144:A159_A0.0330.1180.3193.392-17.6134.918
159A_U167:A173_A-0.4453.8710.582-17.4761.734-162.93
162A_U168:G188_A-5.2950.3240.08120.4586.869-86.028
13A_U202:G119_A1.772-0.42-0.2115.229-12.582.402
16A_U205:G116_A1.3460.0130.1595.684-10.3548.134
119A_U221:A252_A0.078-0.0390.4866.376-13.2250.244
125A_U228:A246_A-0.080.1380.0095.862-11.3694.244
168B_A123:A198_B3.9960.9251.6127.60237.753-102.179
177B_A133:U190_B0.094-0.2680.016-1.877-12.0393.875
180B_A136:U182_B0.265-0.141-0.531-7.018-13.885-6.187
183B_A139:G164_B-6.617-4.770.717-13.46224.825-0.86
184B_A140:G163_B-6.901-3.928-0.2279.867-11.4432.242
190B_A146:U157_B0.118-0.2330.0712.67-13.4553.352
1100B_A206:A114_B6.732-4.397-0.5155.172-6.511-13.903
1101B_A207:A113_B-6.62-4.3170.2542.698-12.567-17.132
1107B_A214:U107_B0.259-0.041-0.181-0.6242.7733.148
1120B_A230:U244_B-0.197-0.2670.478.841-8.696-1.604
1121B_A231:U243_B-0.065-0.024-0.039-0.839-12.8340.464
1123B_A233:U241_B-0.372-0.1310.291-3.906-10.1710.404
1125B_A235:U239_B0.099-0.5660.24-2.826-26.065-16.635
1115B_A248:A151_B1.631.156-0.253-24.235-1.336-178.095
169B_C121:G200_B0.128-0.051-0.3255.547-6.611-6.943
170B_C124:C197_B-4.6-2.3091.529-4.476-1.493-63.774
172B_C127:G195_B0.5160.066-0.04224.555-28.523-0.173
173B_C128:G194_B0.742-0.289-0.4510.972-10.2263.023
176B_C132:G191_B0.8270.327-0.3618.477-7.0124.242
181B_C137:G181_B0.1480.0020.2293.094-23.6196.604
182B_C138:G180_B0.271-0.063-0.2036.816-9.585-1.483
187B_C143:G160_B0.223-0.0880.1063.061-12.720.325
189B_C145:G158_B0.45-0.1610.4964.057-14.4544.828
163B_C165:G175_B-0.426-0.157-0.037-7.405-10.1763.974
164B_C166:G174_B0.0060.091-0.1431.338-12.5612.857
197B_C203:G118_B0.297-0.289-0.3886.451-17.4423.143
198B_C204:G117_B0.133-0.1310.027-2.998-9.801-1.302
1102B_C208:G112_B0.2520.0870.0862.236-12.1851.891
1103B_C209:G111_B-0.55-0.183-0.4038.579-2.353-3.761
1104B_C211:G110_B0.302-0.151-0.0673.5551.286-1.756
1106B_C213:G108_B0.203-0.219-0.116-2.462-8.8942.18
1109B_C216:A104_B1.101-0.2340.17220.877-16.957-4.437
1110B_C217:G103_B0.375-0.029-0.184-3.176-17.083.777
1113B_C222:G251_B0.573-0.139-0.06615.125-18.074-0.919
1114B_C223:G250_B0.183-0.168-0.0532.635-14.669-4.027
1119B_C229:G245_B0.188-0.3740.0115.219-4.352-2.732
1122B_C232:G242_B0.305-0.0940.0364.542-11.622.416
171B_G126:A196_B-0.0331.7810.32832.626-13.12-17.981
174B_G129:C193_B-0.365-0.3440.404-11.022-7.2192.627
178B_G134:C189_B-0.576-0.221-0.163-11.454-16.044-0.357
185B_G141:U162_B-2.546-0.697-0.1737.852-15.5054.139
191B_G147:U156_B-1.869-0.398-0.4530.795-8.0894.072
192B_G148:U155_B-1.893-0.373-0.33-5.939-4.962.637
193B_G149:C154_B-0.3330.079-0.396-3.4265.6435.322
195B_G201:U120_B-2.578-0.1660.1664.751-6.8065.418
1105B_G212:C109_B-0.146-0.032-0.57-9.18-8.9351.205
1108B_G215:A105_B0.0471.457-0.21213.576-3.325-15.463
1111B_G220:U253_B-2.111-0.3390.4561.347-5.8760.812
1117B_G227:U247_B-2.021-0.5570.146-4.122-7.1673.163
1124B_G234:C240_B-0.5230.124-0.319-10.646-22.295-4.028
175B_U130:A192_B0.355-0.2990.2264.28-6.622-11.686
179B_U135:A187_B-0.0393.3860.464-3.811-19.354-63.447
186B_U142:A161_B-0.371-0.202-0.062.423-17.149-1.97
188B_U144:A159_B-0.035-0.0030.166.475-15.0574.725
165B_U167:A173_B-0.5844.220.665-13.9495.384-160.095
194B_U168:G188_B-5.8010.0450.19322.1945.577-88.49
196B_U202:G119_B2.184-0.67-0.08610.476-15.625-2.66
199B_U205:G116_B2.184-0.6670.227-3.68-8.564-3.675
1112B_U221:A252_B-0.064-0.2080.3876.606-14.449-1.291
1118B_U228:A246_B-0.106-0.034-0.1386.77-13.2162.06
1116B_U249:A226_B0.189-0.006-0.31621.01529.547-17.357

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.