A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 9-Feb-2023 number of released structures: 12635
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NDB ID: 6BJX  PDB ID: 6BJX 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
139AA_A133G134:C189U190_AA-0.194-1.5483.480.9689.21631.98-4.2420.52.92716.304-1.71233.262
142AA_A136C137:G181U182_AA0.799-1.3212.968-3.8764.84937.035-2.604-1.6822.6857.5686.0537.534
144AA_A139A140:G163G164_AA-0.448-0.5692.984-10.39611.98737.371-2.043-0.412.71117.7615.40340.489
145AA_A140G141:U162G163_AA-0.246-0.9313.431-9.0173.44553.621-1.237-0.3053.3673.7849.90554.419
151AA_A146G147:U156U157_AA-0.203-1.6132.992-4.20117.30224.049-5.902-0.2781.52735.8958.71629.845
17AA_A206A207:A113A114_AA-0.176-1.2313.903-7.074-1.445-9.4438.151-11.6462.857.498-36.712-11.882
18AA_A207C208:G112A113_AA0.929-1.0583.705-2.6510.98360.992-1.094-1.0563.6490.9682.61161.051
114AA_A214G215:A105U107_AA0.91-2.733.164-6.9941.55841.014-3.996-1.972.8772.2039.89141.609
123AA_A226G227:U247U249_AA4.978-0.1082.496-5.22433.74458.346-1.051-4.6671.80531.8354.92866.836
127AA_A230A231:U243U244_AA-0.61-1.5523.4782.3627.23233.489-3.7741.4083.03812.353-4.03434.318
128AA_A231C232:G242U243_AA0.796-1.2922.9821.0377.66833.354-3.251-1.212.65213.14-1.77634.215
130AA_A233G234:C240U241_AA-0.515-1.673.241.2614.74131.264-3.8971.1662.9388.73-2.32231.637
122AA_A248A226:U249A151_AA3.2033.4441.262-157.20351.79990.121.679-1.76-0.48526.55780.598169.784
132AA_C124G126:A196C197_AA2.232-0.3152.9228.9077.11457.734-0.667-1.8433.157.289-9.12658.754
134AA_C127C128:G194G195_AA0.084-1.8143.744-6.74510.6739.424-3.803-0.8993.11615.3469.70141.318
135AA_C128G129:C193G194_AA-0.075-1.6083.4754.76811.79931.489-4.6110.8782.67820.713-8.37133.903
138AA_C132A133:U190G191_AA-0.931-1.8582.853-0.0572.38426.148-4.6342.0372.6775.2550.12526.254
143AA_C137C138:G180G181_AA-1.242-1.9613.322-1.23217.27429.72-5.6861.9381.96730.6252.18434.299
148AA_C143U144:A159G160_AA-0.027-1.2333.139-0.3666.4130.158-3.472-0.0142.82312.1470.69330.818
150AA_C145A146:U157G158_AA-0.335-1.3563.1551.83212.45530.277-4.3080.8742.40222.654-3.33232.733
154AA_C165C166:G174G175_AA-0.042-0.9143.4081.68913.50435.312-3.1470.2822.87521.309-2.66637.766
155AA_C166U167:A173G174_AA2.782-1.376-0.754-72.814-157.946-58.0930.3691.54-0.44180.392-37.061-174.687
157AA_C170G169:C255G254_BB0.9562.008-3.5084.206-2.094-39.093-3.2480.885-3.4813.1156.258-39.363
14AA_C203C204:G117G118_AA-0.61-1.4993.482-1.88615.17328.236-5.350.7792.41828.6033.55532.035
15AA_C204U205:G116G117_AA0.815-0.8762.8971.51110.81932.499-2.939-1.1812.51918.685-2.6134.239
19AA_C208C209:G111G112_AA-0.259-1.4642.9013.7438.03830.026-3.9711.0652.3915.105-7.03331.279
110AA_C209C211:G110G111_AA-0.559-1.4883.125-0.8367.6738.551-3.0490.742.80111.4771.25139.287
111AA_C211G212:C109G110_AA-0.06-2.03.9813.5784.31830.81-4.6640.9053.6438.044-6.66431.304
113AA_C213A214:U107G108_AA0.743-1.7873.397-2.8734.35827.605-4.693-2.1972.9939.035.95428.085
116AA_C216C217:G103A104_AA-0.025-1.9684.474-0.8247.97234.952-4.691-0.1133.94413.0611.3535.831
117AA_C217G220:U253G103_AA-1.246-0.0897.2651.479-1.347101.109-0.0120.8567.252-0.872-0.958101.124
120AA_C222C223:G250G251_AA-1.007-2.0993.281-3.4687.31529.623-5.3271.2582.79213.9826.62830.685
121AA_C223A248:A151G250_AA-4.216-5.7661.057-145.237-32.29786.676-2.6780.9724.573-17.18177.26157.431
126AA_C229A230:U244G245_AA0.092-1.7932.978-1.9538.98728.96-4.922-0.5012.31917.4253.78630.356
129AA_C232A233:U241G242_AA-0.011-1.6643.1810.3249.25429.646-4.710.0772.55817.554-0.61531.027
133AA_G126C127:G195A196_AA1.303-1.4073.0485.0713.43839.29-2.444-1.3633.0585.075-7.48639.746
136AA_G129U130:A192C193_AA-1.052-1.0912.64711.0858.93237.419-2.3482.4721.9713.346-16.56339.945
140AA_G134U135:A187C189_AA-0.443-2.5332.75-9.7195.61563.016-2.5930.0742.5775.3279.2263.907
146AA_G141U142:A161U162_AA-0.244-1.3693.2840.0781.96542.487-2.0850.3443.222.71-0.10842.53
152AA_G147G148:U155U156_AA0.322-1.6623.238-8.55510.30633.306-4.045-1.642.47817.14514.23135.828
153AA_G148G149:C154U155_AA-0.661-1.6913.297-1.6362.30236.897-2.9730.8223.2153.6312.58137.002
11AA_G200G201:U120C121_AA0.491-2.1033.537-3.1845.32931.373-4.805-1.483.0839.7365.81731.966
12AA_G201U202:G119U120_AA0.021-0.9543.025-0.4543.46646.186-1.482-0.0622.9494.410.57846.311
112AA_G212C213:G108C109_AA-0.784-1.8173.07-4.674-1.4929.099-3.2610.5723.24-2.9399.22129.501
115AA_G215C216:A104A105_AA-0.09-1.5173.033-0.5267.11536.296-3.240.082.69811.2870.83536.967
118AA_G220U221:A252U253_AA-0.19-1.3263.178-0.7843.53239.286-2.3620.1933.0565.2391.16439.446
124AA_G227U228:A246U247_AA-0.075-1.1612.898-2.4276.74438.148-2.455-0.1412.66210.2083.67338.791
131AA_G234A235:U239C240_AA-0.174-1.3373.317-1.922.34734.351-2.621-0.0063.2263.9653.24434.481
161AA_G254C255:G169C170_BB0.67-2.063.4455.4771.2240.95-3.057-0.3283.4431.733-7.78441.317
137AA_U130C132:G191A192_AA-0.22-1.0543.847-8.28114.33341.334-2.907-0.5823.30819.39511.20644.391
141AA_U135A136:U182A187_AA-0.8260.5773.4246.24110.2120.409-11.47412.6620.17975.13-45.91511.975
147AA_U142C143:G160A161_AA-0.053-1.5333.251-1.5217.6232.544-3.852-0.1452.8313.3612.66633.435
149AA_U144C145:G158A159_AA0.269-1.0063.1640.9557.26335.905-2.539-0.3052.91811.633-1.5336.621
156AA_U167C170:G254A173_BA-1.462.429-6.3926.8044.589-17.452-2.72-11.083-5.856-14.15320.981-19.272
13AA_U202C203:G118G119_AA-0.099-1.8073.176.11514.05826.425-5.7821.2091.91827.961-12.16230.481
16AA_U205A206:A114G116_AA0.746-0.7845.249-7.69835.12766.758-2.365-0.9914.36129.8286.53774.828
119AA_U221C222:G251A252_AA0.408-1.2033.0883.4261.75737.265-2.091-0.2123.0552.74-5.34437.457
125AA_U228C229:G245A246_AA-0.424-1.2873.338-1.19910.87935.028-3.490.5152.83917.5531.93436.647
162BB_A123C121:G200A198_BB-2.593-2.241-1.515-15.066147.538-69.0261.359-1.3090.719-80.445-8.215-153.992
171BB_A133G134:C189U190_BB-0.313-1.6013.36-0.6727.50931.785-4.1170.4442.92113.4751.20632.644
174BB_A136C137:G181U182_BB1.075-1.3432.861-4.1323.21436.805-2.467-2.1492.6075.0586.50437.163
176BB_A139A140:G163G164_BB-0.415-0.4853.034-11.59311.43535.528-2.014-0.6832.75617.64117.88638.972
177BB_A140G141:U162G163_BB0.136-0.8793.407-8.275.36854.348-1.275-0.6493.2625.8238.97155.168
183BB_A146G147:U156U157_BB-0.384-1.4852.895-2.43917.73426.604-5.1380.3621.63934.0724.68631.976
191BB_A206A207:A113A114_BB0.284-0.973.43-1.1183.202-20.4991.2050.2693.548-8.92-3.113-20.774
192BB_A207C208:G112A113_BB1.565-0.7273.427-0.0686.67263.264-0.993-1.4893.3426.3420.06563.578
198BB_A214G215:A105U107_BB0.681-2.8723.072-4.4771.20441.276-4.168-1.3962.9051.7016.32741.524
1111BB_A230A231:U243U244_BB-0.346-1.4563.4233.3038.82833.368-3.7861.0822.90915.006-5.61434.637
1112BB_A231C232:G242U243_BB0.608-1.3523.0270.8489.4433.461-3.525-0.9042.57616.0-1.43734.741
1114BB_A233G234:C240U241_BB-0.229-1.6923.4575.2996.04433.171-3.8521.2383.03910.398-9.11634.104
1106BB_A248U249:A226A151_BB0.522.217-4.2589.32312.625-38.539-1.207-0.685-4.728-18.23413.465-41.499
163BB_C121C124:C197G200_BB-2.7132.5815.36317.215-144.824-18.4622.64-0.9433.74186.56910.29-146.299
164BB_C124G126:A196C197_BB1.624-0.1833.15810.08313.67758.38-0.847-1.1183.26213.707-10.10560.593
166BB_C127C128:G194G195_BB-0.426-1.9643.912-2.43710.17936.249-4.5220.3063.28215.9553.81937.681
167BB_C128G129:C193G194_BB-0.17-1.9263.35-4.39811.85326.365-6.164-0.5322.28924.299.01229.191
170BB_C132A133:U190G191_BB-0.39-1.73.439-3.2669.28128.209-5.1910.0932.77818.3516.45729.843
175BB_C137C138:G180G181_BB-1.054-1.9753.0612.93914.9528.063-5.7172.3371.70128.341-5.57131.859
180BB_C143U144:A159G160_BB0.064-1.2873.0760.717.88230.426-3.6970.02.66814.708-1.32431.414
182BB_C145A146:U157G158_BB-0.159-1.2733.012.7612.0429.77-4.1180.7042.31122.266-5.10432.178
158BB_C165C166:G174G175_BB0.025-1.043.0234.3959.87533.051-3.0740.5522.59716.807-7.4834.727
159BB_C166U167:A173G174_BB2.828-1.449-0.694-69.781-159.902-50.0390.3851.564-0.47281.414-35.529-174.985
188BB_C203C204:G117G118_BB-0.412-1.7143.478-4.16212.2731.582-4.8360.0552.67821.4497.27634.074
189BB_C204U205:G116G117_BB0.154-1.273.2242.5099.57839.97-2.7880.0372.86313.758-3.60341.129
193BB_C208C209:G111G112_BB-0.49-1.6392.996.416.60627.879-5.0631.7011.63530.812-11.87532.98
194BB_C209C211:G110G111_BB-0.63-1.283.384-4.0639.72941.164-2.760.4573.06413.5715.66742.436
195BB_C211G212:C109G110_BB0.523-2.4093.9592.5021.35925.737-5.827-0.3363.8623.038-5.59525.892
197BB_C213A214:U107G108_BB0.636-2.0143.259-0.9985.39328.492-5.134-1.4772.81510.832.00529.004
1100BB_C216C217:G103A104_BB0.365-2.3953.7213.2113.95429.42-5.5510.0233.3977.713-6.26429.848
1101BB_C217G220:U253G103_BB-1.271-0.4077.008-0.419-0.654103.57-0.2390.7967.013-0.4160.267103.573
1104BB_C222C223:G250G251_BB-0.976-2.1883.431-3.5938.54729.638-5.6961.1512.80216.2166.81731.024
1105BB_C223A248:A151G250_BB-4.307-5.7031.061-146.466-30.13581.411-2.6440.9044.713-16.10878.29157.022
1110BB_C229A230:U244G245_BB0.198-1.8263.034-1.0437.86828.258-5.052-0.5832.43815.7282.08429.329
1113BB_C232A233:U241G242_BB0.015-1.7913.173-2.2029.20728.332-5.177-0.4352.47318.184.34829.841
165BB_G126C127:G195A196_BB1.137-1.6173.282-1.6432.23639.1-2.674-1.8883.143.3362.45239.194
168BB_G129U130:A192C193_BB-0.799-1.0252.934.415.66140.105-2.0131.572.6688.176-6.36940.716
172BB_G134U135:A187C189_BB-0.417-2.7542.822-8.1733.29161.878-2.7840.0862.7183.1847.90562.441
178BB_G141U142:A161U162_BB-0.419-1.3173.347-2.0682.72142.374-2.0960.3653.2763.7582.85642.505
184BB_G147G148:U155U156_BB0.035-1.6123.369-7.15811.03832.909-4.207-1.0662.64518.58612.05335.373
185BB_G148G149:C154U155_BB-0.087-1.7273.405-1.2841.78534.055-3.234-0.0613.3143.0432.18934.124
186BB_G201U202:G119U120_BB-0.561-1.0463.089-0.3044.99248.553-1.620.6572.9786.0520.36948.794
196BB_G212C213:G108C109_BB-0.973-2.0223.075-5.250.19232.269-3.6250.8553.1770.3429.36832.683
199BB_G215C216:A104A105_BB0.429-1.6363.086-7.5964.02238.668-2.844-1.4422.7795.98411.30239.576
1102BB_G220U221:A252U253_BB-0.37-1.4593.126-2.1292.12837.069-2.5560.3123.0563.343.34237.186
1108BB_G227U228:A246U247_BB-0.09-1.1272.946-0.3219.4238.859-2.5840.12.61513.9110.47539.943
1115BB_G234A235:U239C240_BB-0.138-1.2993.295-4.5693.34233.085-2.794-0.5043.1435.8157.9533.552
169BB_U130C132:G191A192_BB-0.571-1.2563.1326.7135.58441.149-2.2851.4382.8227.838-9.42342.025
173BB_U135A136:U182A187_BB-0.6990.6253.6775.1716.2072.422-14.26820.1841.08856.346-46.9478.434
179BB_U142C143:G160A161_BB0.032-1.5313.2380.2873.5333.073-3.244-0.0093.0636.179-0.50233.257
181BB_U144C145:G158A159_BB0.342-0.9863.236-0.1139.07936.544-2.657-0.5442.91614.2110.17737.618
160BA_U167G254:C170A173_BB0.6366.5963.061-172.89523.83355.2713.106-1.7341.66112.11787.899175.155
187BB_U202C203:G118G119_BB-0.158-2.0243.0754.23213.27426.065-6.2231.0261.80627.106-8.64229.498
190BB_U205A206:A114G116_BB1.19-1.4425.0-2.51519.63467.129-2.307-1.1754.44417.3732.22669.658
1103BB_U221C222:G251A252_BB0.286-1.2192.9532.5942.03437.361-2.135-0.1412.8983.168-4.03937.501
1109BB_U228C229:G245A246_BB-0.379-1.2363.261-1.2839.57834.697-3.2990.442.84315.6882.10235.978
1107BB_U249G227:U247A226_BB-0.651-2.2365.164128.545-67.041173.158-1.050.4565.182-33.534-64.298177.943

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.