6BJX: Base Pair Morphology Step Parameters

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As of 9-Feb-2023 number of released structures: 12635

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NDB ID: 6BJX PDB ID: 6BJX

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	39	AA_A133G134:C189U190_AA	-0.194	-1.548	3.48	0.968	9.216	31.98	-4.242	0.5	2.927	16.304	-1.712	33.262
1	42	AA_A136C137:G181U182_AA	0.799	-1.321	2.968	-3.876	4.849	37.035	-2.604	-1.682	2.685	7.568	6.05	37.534
1	44	AA_A139A140:G163G164_AA	-0.448	-0.569	2.984	-10.396	11.987	37.371	-2.043	-0.41	2.711	17.76	15.403	40.489
1	45	AA_A140G141:U162G163_AA	-0.246	-0.931	3.431	-9.017	3.445	53.621	-1.237	-0.305	3.367	3.784	9.905	54.419
1	51	AA_A146G147:U156U157_AA	-0.203	-1.613	2.992	-4.201	17.302	24.049	-5.902	-0.278	1.527	35.895	8.716	29.845
1	7	AA_A206A207:A113A114_AA	-0.176	-1.231	3.903	-7.074	-1.445	-9.443	8.151	-11.646	2.85	7.498	-36.712	-11.882
1	8	AA_A207C208:G112A113_AA	0.929	-1.058	3.705	-2.651	0.983	60.992	-1.094	-1.056	3.649	0.968	2.611	61.051
1	14	AA_A214G215:A105U107_AA	0.91	-2.73	3.164	-6.994	1.558	41.014	-3.996	-1.97	2.877	2.203	9.891	41.609
1	23	AA_A226G227:U247U249_AA	4.978	-0.108	2.496	-5.224	33.744	58.346	-1.051	-4.667	1.805	31.835	4.928	66.836
1	27	AA_A230A231:U243U244_AA	-0.61	-1.552	3.478	2.362	7.232	33.489	-3.774	1.408	3.038	12.353	-4.034	34.318
1	28	AA_A231C232:G242U243_AA	0.796	-1.292	2.982	1.037	7.668	33.354	-3.251	-1.21	2.652	13.14	-1.776	34.215
1	30	AA_A233G234:C240U241_AA	-0.515	-1.67	3.24	1.261	4.741	31.264	-3.897	1.166	2.938	8.73	-2.322	31.637
1	22	AA_A248A226:U249A151_AA	3.203	3.444	1.262	-157.203	51.799	90.12	1.679	-1.76	-0.485	26.557	80.598	169.784
1	32	AA_C124G126:A196C197_AA	2.232	-0.315	2.922	8.907	7.114	57.734	-0.667	-1.843	3.15	7.289	-9.126	58.754
1	34	AA_C127C128:G194G195_AA	0.084	-1.814	3.744	-6.745	10.67	39.424	-3.803	-0.899	3.116	15.346	9.701	41.318
1	35	AA_C128G129:C193G194_AA	-0.075	-1.608	3.475	4.768	11.799	31.489	-4.611	0.878	2.678	20.713	-8.371	33.903
1	38	AA_C132A133:U190G191_AA	-0.931	-1.858	2.853	-0.057	2.384	26.148	-4.634	2.037	2.677	5.255	0.125	26.254
1	43	AA_C137C138:G180G181_AA	-1.242	-1.961	3.322	-1.232	17.274	29.72	-5.686	1.938	1.967	30.625	2.184	34.299
1	48	AA_C143U144:A159G160_AA	-0.027	-1.233	3.139	-0.366	6.41	30.158	-3.472	-0.014	2.823	12.147	0.693	30.818
1	50	AA_C145A146:U157G158_AA	-0.335	-1.356	3.155	1.832	12.455	30.277	-4.308	0.874	2.402	22.654	-3.332	32.733
1	54	AA_C165C166:G174G175_AA	-0.042	-0.914	3.408	1.689	13.504	35.312	-3.147	0.282	2.875	21.309	-2.666	37.766
1	55	AA_C166U167:A173G174_AA	2.782	-1.376	-0.754	-72.814	-157.946	-58.093	0.369	1.54	-0.441	80.392	-37.061	-174.687
1	57	AA_C170G169:C255G254_BB	0.956	2.008	-3.508	4.206	-2.094	-39.093	-3.248	0.885	-3.481	3.115	6.258	-39.363
1	4	AA_C203C204:G117G118_AA	-0.61	-1.499	3.482	-1.886	15.173	28.236	-5.35	0.779	2.418	28.603	3.555	32.035
1	5	AA_C204U205:G116G117_AA	0.815	-0.876	2.897	1.511	10.819	32.499	-2.939	-1.181	2.519	18.685	-2.61	34.239
1	9	AA_C208C209:G111G112_AA	-0.259	-1.464	2.901	3.743	8.038	30.026	-3.971	1.065	2.39	15.105	-7.033	31.279
1	10	AA_C209C211:G110G111_AA	-0.559	-1.488	3.125	-0.836	7.67	38.551	-3.049	0.74	2.801	11.477	1.251	39.287
1	11	AA_C211G212:C109G110_AA	-0.06	-2.0	3.981	3.578	4.318	30.81	-4.664	0.905	3.643	8.044	-6.664	31.304
1	13	AA_C213A214:U107G108_AA	0.743	-1.787	3.397	-2.873	4.358	27.605	-4.693	-2.197	2.993	9.03	5.954	28.085
1	16	AA_C216C217:G103A104_AA	-0.025	-1.968	4.474	-0.824	7.972	34.952	-4.691	-0.113	3.944	13.061	1.35	35.831
1	17	AA_C217G220:U253G103_AA	-1.246	-0.089	7.265	1.479	-1.347	101.109	-0.012	0.856	7.252	-0.872	-0.958	101.124
1	20	AA_C222C223:G250G251_AA	-1.007	-2.099	3.281	-3.468	7.315	29.623	-5.327	1.258	2.792	13.982	6.628	30.685
1	21	AA_C223A248:A151G250_AA	-4.216	-5.766	1.057	-145.237	-32.297	86.676	-2.678	0.972	4.573	-17.181	77.26	157.431
1	26	AA_C229A230:U244G245_AA	0.092	-1.793	2.978	-1.953	8.987	28.96	-4.922	-0.501	2.319	17.425	3.786	30.356
1	29	AA_C232A233:U241G242_AA	-0.011	-1.664	3.181	0.324	9.254	29.646	-4.71	0.077	2.558	17.554	-0.615	31.027
1	33	AA_G126C127:G195A196_AA	1.303	-1.407	3.048	5.071	3.438	39.29	-2.444	-1.363	3.058	5.075	-7.486	39.746
1	36	AA_G129U130:A192C193_AA	-1.052	-1.091	2.647	11.085	8.932	37.419	-2.348	2.472	1.97	13.346	-16.563	39.945
1	40	AA_G134U135:A187C189_AA	-0.443	-2.533	2.75	-9.719	5.615	63.016	-2.593	0.074	2.577	5.327	9.22	63.907
1	46	AA_G141U142:A161U162_AA	-0.244	-1.369	3.284	0.078	1.965	42.487	-2.085	0.344	3.22	2.71	-0.108	42.53
1	52	AA_G147G148:U155U156_AA	0.322	-1.662	3.238	-8.555	10.306	33.306	-4.045	-1.64	2.478	17.145	14.231	35.828
1	53	AA_G148G149:C154U155_AA	-0.661	-1.691	3.297	-1.636	2.302	36.897	-2.973	0.822	3.215	3.631	2.581	37.002
1	1	AA_G200G201:U120C121_AA	0.491	-2.103	3.537	-3.184	5.329	31.373	-4.805	-1.48	3.083	9.736	5.817	31.966
1	2	AA_G201U202:G119U120_AA	0.021	-0.954	3.025	-0.454	3.466	46.186	-1.482	-0.062	2.949	4.41	0.578	46.311
1	12	AA_G212C213:G108C109_AA	-0.784	-1.817	3.07	-4.674	-1.49	29.099	-3.261	0.572	3.24	-2.939	9.221	29.501
1	15	AA_G215C216:A104A105_AA	-0.09	-1.517	3.033	-0.526	7.115	36.296	-3.24	0.08	2.698	11.287	0.835	36.967
1	18	AA_G220U221:A252U253_AA	-0.19	-1.326	3.178	-0.784	3.532	39.286	-2.362	0.193	3.056	5.239	1.164	39.446
1	24	AA_G227U228:A246U247_AA	-0.075	-1.161	2.898	-2.427	6.744	38.148	-2.455	-0.141	2.662	10.208	3.673	38.791
1	31	AA_G234A235:U239C240_AA	-0.174	-1.337	3.317	-1.92	2.347	34.351	-2.621	-0.006	3.226	3.965	3.244	34.481
1	61	AA_G254C255:G169C170_BB	0.67	-2.06	3.445	5.477	1.22	40.95	-3.057	-0.328	3.443	1.733	-7.784	41.317
1	37	AA_U130C132:G191A192_AA	-0.22	-1.054	3.847	-8.281	14.333	41.334	-2.907	-0.582	3.308	19.395	11.206	44.391
1	41	AA_U135A136:U182A187_AA	-0.826	0.577	3.424	6.241	10.212	0.409	-11.474	12.662	0.179	75.13	-45.915	11.975
1	47	AA_U142C143:G160A161_AA	-0.053	-1.533	3.251	-1.521	7.62	32.544	-3.852	-0.145	2.83	13.361	2.666	33.435
1	49	AA_U144C145:G158A159_AA	0.269	-1.006	3.164	0.955	7.263	35.905	-2.539	-0.305	2.918	11.633	-1.53	36.621
1	56	AA_U167C170:G254A173_BA	-1.46	2.429	-6.392	6.804	4.589	-17.452	-2.72	-11.083	-5.856	-14.153	20.981	-19.272
1	3	AA_U202C203:G118G119_AA	-0.099	-1.807	3.17	6.115	14.058	26.425	-5.782	1.209	1.918	27.961	-12.162	30.481
1	6	AA_U205A206:A114G116_AA	0.746	-0.784	5.249	-7.698	35.127	66.758	-2.365	-0.991	4.361	29.828	6.537	74.828
1	19	AA_U221C222:G251A252_AA	0.408	-1.203	3.088	3.426	1.757	37.265	-2.091	-0.212	3.055	2.74	-5.344	37.457
1	25	AA_U228C229:G245A246_AA	-0.424	-1.287	3.338	-1.199	10.879	35.028	-3.49	0.515	2.839	17.553	1.934	36.647
1	62	BB_A123C121:G200A198_BB	-2.593	-2.241	-1.515	-15.066	147.538	-69.026	1.359	-1.309	0.719	-80.445	-8.215	-153.992
1	71	BB_A133G134:C189U190_BB	-0.313	-1.601	3.36	-0.672	7.509	31.785	-4.117	0.444	2.921	13.475	1.206	32.644
1	74	BB_A136C137:G181U182_BB	1.075	-1.343	2.861	-4.132	3.214	36.805	-2.467	-2.149	2.607	5.058	6.504	37.163
1	76	BB_A139A140:G163G164_BB	-0.415	-0.485	3.034	-11.593	11.435	35.528	-2.014	-0.683	2.756	17.641	17.886	38.972
1	77	BB_A140G141:U162G163_BB	0.136	-0.879	3.407	-8.27	5.368	54.348	-1.275	-0.649	3.262	5.823	8.971	55.168
1	83	BB_A146G147:U156U157_BB	-0.384	-1.485	2.895	-2.439	17.734	26.604	-5.138	0.362	1.639	34.072	4.686	31.976
1	91	BB_A206A207:A113A114_BB	0.284	-0.97	3.43	-1.118	3.202	-20.499	1.205	0.269	3.548	-8.92	-3.113	-20.774
1	92	BB_A207C208:G112A113_BB	1.565	-0.727	3.427	-0.068	6.672	63.264	-0.993	-1.489	3.342	6.342	0.065	63.578
1	98	BB_A214G215:A105U107_BB	0.681	-2.872	3.072	-4.477	1.204	41.276	-4.168	-1.396	2.905	1.701	6.327	41.524
1	111	BB_A230A231:U243U244_BB	-0.346	-1.456	3.423	3.303	8.828	33.368	-3.786	1.082	2.909	15.006	-5.614	34.637
1	112	BB_A231C232:G242U243_BB	0.608	-1.352	3.027	0.848	9.44	33.461	-3.525	-0.904	2.576	16.0	-1.437	34.741
1	114	BB_A233G234:C240U241_BB	-0.229	-1.692	3.457	5.299	6.044	33.171	-3.852	1.238	3.039	10.398	-9.116	34.104
1	106	BB_A248U249:A226A151_BB	0.52	2.217	-4.258	9.323	12.625	-38.539	-1.207	-0.685	-4.728	-18.234	13.465	-41.499
1	63	BB_C121C124:C197G200_BB	-2.713	2.581	5.363	17.215	-144.824	-18.462	2.64	-0.943	3.741	86.569	10.29	-146.299
1	64	BB_C124G126:A196C197_BB	1.624	-0.183	3.158	10.083	13.677	58.38	-0.847	-1.118	3.262	13.707	-10.105	60.593
1	66	BB_C127C128:G194G195_BB	-0.426	-1.964	3.912	-2.437	10.179	36.249	-4.522	0.306	3.282	15.955	3.819	37.681
1	67	BB_C128G129:C193G194_BB	-0.17	-1.926	3.35	-4.398	11.853	26.365	-6.164	-0.532	2.289	24.29	9.012	29.191
1	70	BB_C132A133:U190G191_BB	-0.39	-1.7	3.439	-3.266	9.281	28.209	-5.191	0.093	2.778	18.351	6.457	29.843
1	75	BB_C137C138:G180G181_BB	-1.054	-1.975	3.061	2.939	14.95	28.063	-5.717	2.337	1.701	28.341	-5.571	31.859
1	80	BB_C143U144:A159G160_BB	0.064	-1.287	3.076	0.71	7.882	30.426	-3.697	0.0	2.668	14.708	-1.324	31.414
1	82	BB_C145A146:U157G158_BB	-0.159	-1.273	3.01	2.76	12.04	29.77	-4.118	0.704	2.311	22.266	-5.104	32.178
1	58	BB_C165C166:G174G175_BB	0.025	-1.04	3.023	4.395	9.875	33.051	-3.074	0.552	2.597	16.807	-7.48	34.727
1	59	BB_C166U167:A173G174_BB	2.828	-1.449	-0.694	-69.781	-159.902	-50.039	0.385	1.564	-0.472	81.414	-35.529	-174.985
1	88	BB_C203C204:G117G118_BB	-0.412	-1.714	3.478	-4.162	12.27	31.582	-4.836	0.055	2.678	21.449	7.276	34.074
1	89	BB_C204U205:G116G117_BB	0.154	-1.27	3.224	2.509	9.578	39.97	-2.788	0.037	2.863	13.758	-3.603	41.129
1	93	BB_C208C209:G111G112_BB	-0.49	-1.639	2.99	6.4	16.606	27.879	-5.063	1.701	1.635	30.812	-11.875	32.98
1	94	BB_C209C211:G110G111_BB	-0.63	-1.28	3.384	-4.063	9.729	41.164	-2.76	0.457	3.064	13.571	5.667	42.436
1	95	BB_C211G212:C109G110_BB	0.523	-2.409	3.959	2.502	1.359	25.737	-5.827	-0.336	3.862	3.038	-5.595	25.892
1	97	BB_C213A214:U107G108_BB	0.636	-2.014	3.259	-0.998	5.393	28.492	-5.134	-1.477	2.815	10.83	2.005	29.004
1	100	BB_C216C217:G103A104_BB	0.365	-2.395	3.721	3.211	3.954	29.42	-5.551	0.023	3.397	7.713	-6.264	29.848
1	101	BB_C217G220:U253G103_BB	-1.271	-0.407	7.008	-0.419	-0.654	103.57	-0.239	0.796	7.013	-0.416	0.267	103.573
1	104	BB_C222C223:G250G251_BB	-0.976	-2.188	3.431	-3.593	8.547	29.638	-5.696	1.151	2.802	16.216	6.817	31.024
1	105	BB_C223A248:A151G250_BB	-4.307	-5.703	1.061	-146.466	-30.135	81.411	-2.644	0.904	4.713	-16.108	78.29	157.022
1	110	BB_C229A230:U244G245_BB	0.198	-1.826	3.034	-1.043	7.868	28.258	-5.052	-0.583	2.438	15.728	2.084	29.329
1	113	BB_C232A233:U241G242_BB	0.015	-1.791	3.173	-2.202	9.207	28.332	-5.177	-0.435	2.473	18.18	4.348	29.841
1	65	BB_G126C127:G195A196_BB	1.137	-1.617	3.282	-1.643	2.236	39.1	-2.674	-1.888	3.14	3.336	2.452	39.194
1	68	BB_G129U130:A192C193_BB	-0.799	-1.025	2.93	4.41	5.661	40.105	-2.013	1.57	2.668	8.176	-6.369	40.716
1	72	BB_G134U135:A187C189_BB	-0.417	-2.754	2.822	-8.173	3.291	61.878	-2.784	0.086	2.718	3.184	7.905	62.441
1	78	BB_G141U142:A161U162_BB	-0.419	-1.317	3.347	-2.068	2.721	42.374	-2.096	0.365	3.276	3.758	2.856	42.505
1	84	BB_G147G148:U155U156_BB	0.035	-1.612	3.369	-7.158	11.038	32.909	-4.207	-1.066	2.645	18.586	12.053	35.373
1	85	BB_G148G149:C154U155_BB	-0.087	-1.727	3.405	-1.284	1.785	34.055	-3.234	-0.061	3.314	3.043	2.189	34.124
1	86	BB_G201U202:G119U120_BB	-0.561	-1.046	3.089	-0.304	4.992	48.553	-1.62	0.657	2.978	6.052	0.369	48.794
1	96	BB_G212C213:G108C109_BB	-0.973	-2.022	3.075	-5.25	0.192	32.269	-3.625	0.855	3.177	0.342	9.368	32.683
1	99	BB_G215C216:A104A105_BB	0.429	-1.636	3.086	-7.596	4.022	38.668	-2.844	-1.442	2.779	5.984	11.302	39.576
1	102	BB_G220U221:A252U253_BB	-0.37	-1.459	3.126	-2.129	2.128	37.069	-2.556	0.312	3.056	3.34	3.342	37.186
1	108	BB_G227U228:A246U247_BB	-0.09	-1.127	2.946	-0.321	9.42	38.859	-2.584	0.1	2.615	13.911	0.475	39.943
1	115	BB_G234A235:U239C240_BB	-0.138	-1.299	3.295	-4.569	3.342	33.085	-2.794	-0.504	3.143	5.815	7.95	33.552
1	69	BB_U130C132:G191A192_BB	-0.571	-1.256	3.132	6.713	5.584	41.149	-2.285	1.438	2.822	7.838	-9.423	42.025
1	73	BB_U135A136:U182A187_BB	-0.699	0.625	3.677	5.171	6.207	2.422	-14.268	20.184	1.088	56.346	-46.947	8.434
1	79	BB_U142C143:G160A161_BB	0.032	-1.531	3.238	0.287	3.53	33.073	-3.244	-0.009	3.063	6.179	-0.502	33.257
1	81	BB_U144C145:G158A159_BB	0.342	-0.986	3.236	-0.113	9.079	36.544	-2.657	-0.544	2.916	14.211	0.177	37.618
1	60	BA_U167G254:C170A173_BB	0.636	6.596	3.061	-172.895	23.833	55.271	3.106	-1.734	1.661	12.117	87.899	175.155
1	87	BB_U202C203:G118G119_BB	-0.158	-2.024	3.075	4.232	13.274	26.065	-6.223	1.026	1.806	27.106	-8.642	29.498
1	90	BB_U205A206:A114G116_BB	1.19	-1.442	5.0	-2.515	19.634	67.129	-2.307	-1.175	4.444	17.373	2.226	69.658
1	103	BB_U221C222:G251A252_BB	0.286	-1.219	2.953	2.594	2.034	37.361	-2.135	-0.141	2.898	3.168	-4.039	37.501
1	109	BB_U228C229:G245A246_BB	-0.379	-1.236	3.261	-1.283	9.578	34.697	-3.299	0.44	2.843	15.688	2.102	35.978
1	107	BB_U249G227:U247A226_BB	-0.651	-2.236	5.164	128.545	-67.041	173.158	-1.05	0.456	5.182	-33.534	-64.298	177.943

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.