A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Feb-2020 number of released structures: 10626
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NDB ID: 6BRX  PDB ID: 6BRX 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12C_DA6:DT13_D-0.317-0.0210.207-10.511-10.7686.006
14C_DA8:DT11_D-0.494-0.122-0.418-9.408-8.605-0.508
16C_DA10:DT9_D0.087-0.075-0.2920.497-7.988-2.136
18C_DA12:DT7_D0.0980.0770.38911.714-4.5461.994
13C_DC7:DG12_D0.2280.0650.259-4.568-6.2870.369
17C_DC11:DG8_D0.194-0.07-0.3528.645-4.3091.61
19C_DC13:DG6_D-0.1520.222-0.77841.757-2.351-1.98
11C_DT5:DA14_D0.103-0.0860.624-13.415-13.990.87
15C_DT9:DA10_D0.198-0.104-0.1835.236-10.0263.933
111P_DA6:DT13_T-0.241-0.1050.157-7.671-14.2823.257
113P_DA8:DT11_T-0.059-0.082-0.416-14.87-1.598-0.102
115P_DA10:DT9_T-0.037-0.124-0.267-0.059-4.081-3.488
117P_DA12:DT7_T0.253-0.0030.35516.227-6.4322.635
112P_DC7:DG12_T0.4520.0380.321-6.7-5.7693.493
116P_DC11:DG8_T0.108-0.035-0.1798.418-2.8810.87
118P_DC13:DG6_T0.6440.095-1.06845.155-8.174-2.196
110P_DT5:DA14_T0.24-0.2330.3397.023-12.5943.108
114P_DT9:DA10_T0.205-0.117-0.2481.782-9.9012.969

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.