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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
6BSH
PDB ID:
6BSH
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
2
D_DA3:U26_R
0.529
-0.198
0.258
5.63
-9.633
1.825
1
7
D_DA8:U21_R
0.078
-0.147
0.247
9.452
-9.313
-2.007
1
10
D_DA11:U18_R
0.088
-0.086
0.221
-1.741
-5.38
-6.045
1
14
D_DA15:U14_R
-0.19
-0.042
0.26
-1.294
-13.747
5.36
1
5
D_DC6:G23_R
0.358
-0.188
-0.126
3.902
-13.593
-2.296
1
6
D_DC7:G22_R
0.121
-0.242
-0.344
19.719
-4.439
-0.796
1
8
D_DC9:G20_R
0.389
-0.198
0.062
2.085
-16.424
1.201
1
21
D_DC22:G7_R
1.427
-0.332
-0.097
-3.011
-11.812
-0.938
1
22
D_DC23:G6_R
0.815
-0.566
-0.652
3.623
6.826
-11.13
1
4
D_DG5:C24_R
-0.073
-0.437
0.171
9.603
-11.377
-2.544
1
11
D_DG12:C17_R
-0.409
-0.089
0.116
1.172
-6.051
3.774
1
17
D_DG18:C11_R
-0.055
-0.141
-0.13
-6.224
-13.789
6.783
1
19
D_DG20:C9_R
-0.215
-0.544
0.004
-0.997
-11.176
0.442
1
20
D_DG21:C8_R
-0.374
-0.175
0.056
0.039
-13.843
11.198
1
1
D_DT2:A27_R
-0.216
2.67
-0.074
2.078
-1.938
-90.808
1
3
D_DT4:A25_R
0.098
-0.005
0.049
17.085
-15.999
14.892
1
9
D_DT10:A19_R
0.067
-0.112
0.16
-4.338
-16.504
2.827
1
12
D_DT13:A16_R
-0.38
-0.267
0.277
-1.982
-12.65
3.996
1
13
D_DT14:A15_R
-0.04
-0.236
0.021
5.784
-9.976
-5.286
1
15
D_DT16:A13_R
-0.263
-0.16
0.043
2.884
-20.654
3.603
1
16
D_DT17:A12_R
0.121
-0.148
-0.146
5.324
-18.389
7.099
1
18
D_DT19:A10_R
0.001
-0.434
-0.001
-1.29
-12.952
-1.104
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.