A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 17-Oct-2018 number of released structures: 9817
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NDB ID: 6BSH  PDB ID: 6BSH 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12D_DA3:U26_R0.529-0.1980.2585.63-9.6331.825
17D_DA8:U21_R0.078-0.1470.2479.452-9.313-2.007
110D_DA11:U18_R0.088-0.0860.221-1.741-5.38-6.045
114D_DA15:U14_R-0.19-0.0420.26-1.294-13.7475.36
15D_DC6:G23_R0.358-0.188-0.1263.902-13.593-2.296
16D_DC7:G22_R0.121-0.242-0.34419.719-4.439-0.796
18D_DC9:G20_R0.389-0.1980.0622.085-16.4241.201
121D_DC22:G7_R1.427-0.332-0.097-3.011-11.812-0.938
122D_DC23:G6_R0.815-0.566-0.6523.6236.826-11.13
14D_DG5:C24_R-0.073-0.4370.1719.603-11.377-2.544
111D_DG12:C17_R-0.409-0.0890.1161.172-6.0513.774
117D_DG18:C11_R-0.055-0.141-0.13-6.224-13.7896.783
119D_DG20:C9_R-0.215-0.5440.004-0.997-11.1760.442
120D_DG21:C8_R-0.374-0.1750.0560.039-13.84311.198
11D_DT2:A27_R-0.2162.67-0.0742.078-1.938-90.808
13D_DT4:A25_R0.098-0.0050.04917.085-15.99914.892
19D_DT10:A19_R0.067-0.1120.16-4.338-16.5042.827
112D_DT13:A16_R-0.38-0.2670.277-1.982-12.653.996
113D_DT14:A15_R-0.04-0.2360.0215.784-9.976-5.286
115D_DT16:A13_R-0.263-0.160.0432.884-20.6543.603
116D_DT17:A12_R0.121-0.148-0.1465.324-18.3897.099
118D_DT19:A10_R0.001-0.434-0.001-1.29-12.952-1.104

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.