6BSH: Base Pair Morphology Parameters

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NDB ID: 6BSH PDB ID: 6BSH

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	D_DA3:U26_R	0.529	-0.198	0.258	5.63	-9.633	1.825
1	7	D_DA8:U21_R	0.078	-0.147	0.247	9.452	-9.313	-2.007
1	10	D_DA11:U18_R	0.088	-0.086	0.221	-1.741	-5.38	-6.045
1	14	D_DA15:U14_R	-0.19	-0.042	0.26	-1.294	-13.747	5.36
1	5	D_DC6:G23_R	0.358	-0.188	-0.126	3.902	-13.593	-2.296
1	6	D_DC7:G22_R	0.121	-0.242	-0.344	19.719	-4.439	-0.796
1	8	D_DC9:G20_R	0.389	-0.198	0.062	2.085	-16.424	1.201
1	21	D_DC22:G7_R	1.427	-0.332	-0.097	-3.011	-11.812	-0.938
1	22	D_DC23:G6_R	0.815	-0.566	-0.652	3.623	6.826	-11.13
1	4	D_DG5:C24_R	-0.073	-0.437	0.171	9.603	-11.377	-2.544
1	11	D_DG12:C17_R	-0.409	-0.089	0.116	1.172	-6.051	3.774
1	17	D_DG18:C11_R	-0.055	-0.141	-0.13	-6.224	-13.789	6.783
1	19	D_DG20:C9_R	-0.215	-0.544	0.004	-0.997	-11.176	0.442
1	20	D_DG21:C8_R	-0.374	-0.175	0.056	0.039	-13.843	11.198
1	1	D_DT2:A27_R	-0.216	2.67	-0.074	2.078	-1.938	-90.808
1	3	D_DT4:A25_R	0.098	-0.005	0.049	17.085	-15.999	14.892
1	9	D_DT10:A19_R	0.067	-0.112	0.16	-4.338	-16.504	2.827
1	12	D_DT13:A16_R	-0.38	-0.267	0.277	-1.982	-12.65	3.996
1	13	D_DT14:A15_R	-0.04	-0.236	0.021	5.784	-9.976	-5.286
1	15	D_DT16:A13_R	-0.263	-0.16	0.043	2.884	-20.654	3.603
1	16	D_DT17:A12_R	0.121	-0.148	-0.146	5.324	-18.389	7.099
1	18	D_DT19:A10_R	0.001	-0.434	-0.001	-1.29	-12.952	-1.104

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.