A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 17-Oct-2018 number of released structures: 9817
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NDB ID: 6BSJ  PDB ID: 6BSJ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12D_DA4:U26_R0.3040.5440.243-4.636-7.00712.772
18D_DA10:U20_R-0.671-0.4190.071-5.552-11.6621.571
110D_DA12:U18_R0.1860.01-0.264-1.689-10.713.563
114D_DA16:U14_R-0.283-0.113-0.088-11.061-15.7031.648
15D_DC7:G23_R0.665-0.2440.527-4.663-10.0014.458
16D_DC8:G22_R-0.246-0.12-0.0073.033-7.8811.388
121D_DC23:G7_R0.934-0.324-0.3055.233-8.599-11.214
122D_DC24:G6_R-0.443-0.6780.43114.652-3.24-1.07
14D_DG6:C24_R0.5550.0040.16-15.386-7.8419.302
111D_DG13:C17_R-0.5350.1060.172-7.23-10.3451.364
117D_DG19:C11_R-0.497-0.232-0.302-3.188-13.2366.358
119D_DG21:C9_R0.25-0.3690.0530.943-15.0110.488
120D_DG22:C8_R0.166-0.3520.0686.695-8.55.625
11D_DT3:A27_R-0.89-0.098-0.9132.902-0.30611.394
13D_DT5:A25_R-0.1430.195-0.5157.506-21.03810.566
17D_DT9:A21_R-0.717-0.2090.0021.409-4.81-6.255
19D_DT11:A19_R-0.979-0.0160.3530.098-9.9238.109
112D_DT14:A16_R0.123-0.0010.766-4.071-10.1748.237
113D_DT15:A15_R0.324-0.180.0221.171-8.917-0.851
115D_DT17:A13_R-0.415-0.0590.1280.04-24.1249.095
116D_DT18:A12_R-0.029-0.163-0.3798.283-23.5465.741
118D_DT20:A10_R-0.341-0.462-0.2424.696-14.553-7.221

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.