A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 17-Jan-2018 number of released structures: 9301
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NDB ID: 6BSJ  PDB ID: 6BSJ 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12DD_DA4DT5:A25U26_RR-0.35-0.8533.0833.66-0.05426.012-1.8641.6943.008-0.12-8.0826.264
18DD_DA10DT11:A19U20_RR0.256-1.0233.038-0.0035.6334.045-2.515-0.4312.8389.5340.00534.493
110DD_DA12DG13:C17U18_RR0.664-1.6533.337-0.7663.1733.276-3.395-1.283.1555.5191.33433.43
114DD_DA16DT17:A13U14_RR-0.271-1.2972.997-3.2021.31333.011-2.472-0.0152.9572.3025.61533.187
15DD_DC7DC8:G22G23_RR-0.304-1.9612.9212.8513.37125.937-5.0791.3192.6027.441-6.29426.304
16DD_DC8DT9:A21G22_RR-0.526-1.9113.3481.0742.33429.071-4.2991.2773.1674.638-2.13429.182
121DD_DC23DC24:G6G7_RR0.547-1.1252.8682.2084.85119.63-5.036-0.7082.56313.899-6.32820.334
14DD_DG6DC7:G23C24_RR-0.467-1.1143.046-2.379-1.46133.379-1.7070.4413.116-2.5394.13433.492
111DD_DG13DT14:A16C17_RR0.671-1.9443.188-3.6487.40833.072-4.382-1.672.61712.7676.28634.059
117DD_DG19DT20:A10C11_RR-1.195-0.8493.081-2.5576.26734.224-2.3041.6332.96310.5224.29334.868
119DD_DG21DG22:C8C9_RR0.962-2.2773.1622.11912.70823.035-7.734-1.6531.76329.084-4.8526.35
120DD_DG22DC23:G7C8_RR-0.53-1.6363.4592.8243.61736.769-3.0741.2233.2415.707-4.45537.045
11DD_DT3DA4:U26A27_RR0.26-0.3123.297-8.9611.9734.266-2.054-1.5782.8819.22214.38837.296
13DD_DT5DG6:C24A25_RR-0.366-0.9723.745-11.5039.80236.491-2.753-0.9953.34814.89417.47739.398
17DD_DT9DA10:U20A21_RR0.626-1.623.329-1.02611.47130.042-4.835-1.3022.53421.1771.89532.126
19DD_DT11DA12:U18A19_RR0.767-1.3723.1985.79310.12131.261-3.971-0.4332.7318.015-10.31233.314
112DD_DT14DT15:A15A16_RR-1.099-1.3482.9324.1258.65233.266-3.3722.3752.36914.737-7.02634.582
113DD_DT15DA16:U14A15_RR-0.411-1.5653.401-4.46710.80925.994-5.558-0.1462.59122.6299.35328.463
115DD_DT17DT18:A12A13_RR-0.183-0.5663.101-0.1542.36535.827-1.2370.2763.063.8390.2535.903
116DD_DT18DG19:C11A12_RR0.112-1.5073.564-2.55213.98826.069-5.836-0.7472.43428.4745.19529.636
118DD_DT20DG21:C9A10_RR0.701-1.0233.3870.43615.13134.902-3.465-1.0232.73723.886-0.68837.949

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.