A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Oct-2020 number of released structures: 11024
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NDB ID: 6BYY  PDB ID: 6BYY 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11K_DA2:DT15_L0.155-0.231-0.2184.658-17.6122.514
12K_DA3:DT14_L0.23-0.2860.0922.222-11.7867.264
15K_DA6:DT11_L-0.085-0.142-0.099-7.403-9.1392.593
19K_DA10:DT7_L0.058-0.0770.148-6.825-10.2036.152
111K_DA12:DT5_L-0.026-0.092-0.0045.905-16.2674.997
112K_DA13:DT4_L0.707-0.1810.079.52-9.9012.577
114K_DA15:DT2_L-0.681-0.2690.0713.944-21.05510.537
13K_DC4:DG13_L0.148-0.0560.411-9.738-9.6663.613
113K_DG14:DC3_L0.5640.122-0.0721.872-6.38314.687
14K_DT5:DA12_L-0.086-0.211-0.257-2.019-14.5913.825
16K_DT7:DA10_L-0.148-0.161-0.1893.359-11.2482.419
17K_DT8:DA9_L-0.361-0.248-0.0053.07-14.3340.561
18K_DT9:DA8_L-0.275-0.1970.2651.161-9.794-0.776
110K_DT11:DA6_L-0.160.006-0.0455.592-8.2194.807
117E_DA6:DT11_F-1.487-0.0050.075-2.804-18.91110.35
121E_DA10:DT7_F-0.0710.3170.842-4.848-8.81113.279
123E_DA12:DT5_F-1.3120.017-0.265-5.612-14.27515.315
124E_DA13:DT4_F0.389-0.2650.61911.393-19.282-5.15
126E_DA15:DT2_F0.8040.3170.5860.004-10.7595.702
115E_DC4:DG13_F3.711.0881.059-1.627-24.56745.342
125E_DG14:DC3_F0.162-0.142-0.067-1.87-21.5139.238
116E_DT5:DA12_F-0.553-0.495-1.89711.031-26.3415.643
118E_DT7:DA10_F0.57-0.037-0.0911.496-14.2037.152
119E_DT8:DA9_F-1.335-0.2960.116-2.507-12.7331.732
120E_DT9:DA8_F-1.3660.4620.712-20.289-26.6639.464
122E_DT11:DA6_F0.103-0.2830.4460.69-12.7688.05

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.