A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Oct-2020 number of released structures: 11024
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NDB ID: 6BYY  PDB ID: 6BYY 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11KK_DA2DA3:DT14DT15_LL0.148-0.3283.207-2.4164.87235.534-1.208-0.5753.127.9253.93135.935
12KK_DA3DC4:DG13DT14_LL-0.091-0.7383.58-3.442-2.26236.786-0.828-0.3663.611-3.575.43437.008
15KK_DA6DT7:DA10DT11_LL-0.031-0.4852.9021.5922.91327.464-1.6360.4042.836.107-3.33727.66
19KK_DA10DT11:DA6DT7_LL-0.07-0.4382.9881.4990.80325.209-1.2140.5572.9641.838-3.4325.265
111KK_DA12DA13:DT4DT5_LL0.318-0.0343.279-1.5753.61134.093-0.624-0.7863.2416.1332.67534.313
112KK_DA13DG14:DC3DT4_LL0.433-0.1533.607-0.714-5.61738.0280.541-0.7563.585-8.5611.08838.432
13KK_DC4DT5:DA12DG13_LL-0.2550.0933.0687.443.15829.51-0.4071.8562.9136.058-14.27230.573
113KK_DG14DA15:DT2DC3_LL0.051-1.0043.351-1.2945.78827.346-3.44-0.413.07212.0622.69727.969
14KK_DT5DA6:DT11DA12_LL0.5121.9863.439-1.451-3.28548.9552.645-0.7293.292-3.9581.74949.078
16KK_DT7DT8:DA9DA10_LL0.055-0.2313.276-0.133-4.11336.9980.187-0.1043.282-6.4570.20837.218
17KK_DT8DT9:DA8DA9_LL0.136-0.5933.376-2.232-4.92335.73-0.231-0.5483.41-7.9663.61236.124
18KK_DT9DA10:DT7DA8_LL0.32-0.0543.4211.3-1.78243.3990.108-0.33.428-2.409-1.75743.452
110KK_DT11DA12:DT5DA6_LL-0.5471.6783.1930.223-4.32448.4252.3560.6813.039-5.259-0.27148.606
116EE_DA6DT7:DA10DT11_FF0.314-0.1423.011.588-0.66435.634-0.143-0.33.023-1.084-2.59335.675
120EE_DA10DT11:DA6DT7_FF-0.42-0.8413.0412.1284.15326.094-2.8291.4262.8329.106-4.66626.5
122EE_DA12DA13:DT4DT5_FF-0.7420.2372.774-7.1720.92937.2850.260.3442.8681.43711.09137.956
123EE_DA13DG14:DC3DT4_FF0.6-0.4913.7766.3140.87135.963-0.9250.0623.8111.397-10.12836.505
114EE_DC4DT5:DA12DG13_FF-2.1440.0142.51117.5624.7517.915-0.7649.206-0.88517.412-64.36919.827
124EE_DG14DA15:DT2DC3_FF-0.339-0.1712.926-5.7945.38140.325-0.771-0.0822.97.7168.30741.061
115EE_DT5DA6:DT11DA12_FF1.1012.5643.818-6.2292.5745.6813.015-2.0263.7763.2897.97246.149
117EE_DT7DT8:DA9DA10_FF0.312-0.4213.4971.855-1.64831.79-0.445-0.2043.525-3.004-3.38131.884
118EE_DT8DT9:DA8DA9_FF0.623-0.3383.614-0.0234.64633.57-1.401-1.0733.5367.9960.0433.881
119EE_DT9DA10:DT7DA8_FF0.0770.6522.927-5.604-11.56547.0361.567-0.4692.68-14.1836.87248.664
121EE_DT11DA12:DT5DA6_FF-0.2471.9193.4192.743-6.47244.5533.0870.573.106-8.473-3.59145.076

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.