A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Oct-2021 number of released structures: 11721
Search for released structures

NDB ID: 6C1A  PDB ID: 6C1A 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14C_DA4:DT9_D0.06-0.104-0.265-0.874-29.5341.561
15C_DA5:DT8_D-0.188-0.13-0.006-2.36-11.5383.465
19C_DA9:DT4_D0.036-0.1060.1342.902-15.869-1.226
11C_DC1:DG12_D0.283-0.1890.064-7.7742.669-2.63
112C_DC12:DG1_D0.347-0.108-0.1156.121-5.4641.774
12C_DG2:DC11_D-0.371-0.1370.0281.383-4.834-1.123
13C_DG3:DC10_D-0.268-0.1110.24412.699-7.7431.394
17C_DG7:5CM6_D-0.175-0.099-0.285-12.09-4.654-0.295
110C_DG10:DC3_D-0.009-0.1350.5048.85-8.161-1.31
111C_DG11:DC2_D-0.246-0.1270.2081.71-7.896-1.721
16C_DT6:DA7_D0.081-0.105-0.0423.558-7.5041.561
18C_DT8:DA5_D-0.088-0.163-0.0382.707-2.9042.408
116G_DA4:DT9_H-0.052-0.165-0.137-0.947-24.3951.833
117G_DA5:DT8_H-0.013-0.1660.121-5.263-8.7360.518
121G_DA9:DT4_H-0.022-0.0910.2072.018-17.282-2.53
113G_DC1:DG12_H0.419-0.2480.035-4.2292.039-1.819
124G_DC12:DG1_H0.425-0.093-0.16.508-6.2461.573
114G_DG2:DC11_H-0.367-0.0960.2082.252-5.741.468
115G_DG3:DC10_H-0.114-0.1640.249.952-10.4740.024
119G_DG7:5CM6_H-0.252-0.066-0.265-13.296-3.3850.177
122G_DG10:DC3_H0.016-0.0580.5288.327-6.173-1.582
123G_DG11:DC2_H-0.306-0.180.2114.068-5.119-2.99
118G_DT6:DA7_H0.101-0.072-0.063.931-7.9011.781
120G_DT8:DA5_H-0.013-0.1880.0073.041-4.6772.407

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.