A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 6CFK  PDB ID: 6CFK 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
17331A1A_4OC1942G1943:C1931G1932_1A1A-0.308-2.2423.2796.8461.83429.769-4.6041.9022.9963.507-13.09230.582
17391A1A_5MC1964U1965:A1958U1962_1A1A-3.179-0.9190.931-47.921163.92575.452-0.8161.4890.57983.67524.461172.715
111A1A_A6G7:C2905U2906_1A1A1.404-1.9343.5832.12412.28531.172-5.381-2.0852.73521.8-3.7733.515
131A1A_A8U9:A2641U2904_1A1A0.38-2.1443.467-3.196-1.218-53.2982.4670.213.4371.356-3.559-53.4
1111A1A_A21C22:G543U544_1A1A1.016-1.3423.191-0.0373.37335.963-2.621-1.6443.0555.4480.05936.115
1171A1A_A28U29:U536G537_1A1A-0.852-0.0253.3-5.83517.6451.348-1.1320.5673.20519.6386.49554.391
1271A1A_A38C39:G466U467_1A1A-0.211-0.9682.992-0.2756.70633.568-2.5840.3212.75511.4690.47134.213
1321A1A_A43G44:C460U461_1A1A-0.179-0.5712.796-4.427.33529.213-2.321-0.4012.57814.1638.53430.416
1631A1A_A48G166:A149U118_1A1A3.4131.201-0.83927.183170.369-27.4440.4521.542-1.874-87.99914.04-172.738
1501A1A_A63C64:G88U89_1A1A1.71-0.1232.686-3.531-8.874-15.1164.9043.7132.5530.123-11.988-17.865
1731A1A_A77G78:C105U106_1A1A-0.364-1.5453.4439.05711.79936.112-3.7051.6132.66618.116-13.90738.961
1621A1A_A116A48:U118G50_1A1A3.741.5890.91-58.432-145.799153.0990.857-1.8970.232-73.18429.33174.7
1611A1A_A117A116:G50A51_1A1A3.026-2.843-3.74668.412150.426-103.52.351.098-2.129-76.64334.856-170.885
1421A1A_A179A180:A193U195_1A1A0.8221.4813.1813.0532.208-94.247-1.0480.6143.133-1.5062.083-94.304
1431A1A_A180C181:C192A193_1A1A-0.934-1.8633.1044.396-0.304116.707-1.0910.5913.084-0.179-2.582116.759
11091A1A_A210G255:C453U454_1A1A2.356-2.6053.922-8.09810.16585.542-2.161-1.9273.4687.4485.93386.335
1911A1A_A211G213:C220G221_1A1A0.3890.6133.328-1.8958.1857.3960.185-0.5053.3668.4671.96157.956
1931A1A_A214G215:A217U219_1A1A0.5320.4172.7591.85210.94731.177-0.881-0.6622.77119.605-3.31733.049
11071A1A_A222G209:A455A456_1A1A-0.048-3.276-1.959104.515-121.615-31.3110.251-1.236-2.89666.22956.916-161.091
1941A1A_A240G241:C235G236_1A1A2.297-1.62.8363.1342.25544.576-2.283-2.7672.9032.966-4.12244.735
1981A1A_A244A245:A230U232_1A1A0.9890.9613.5237.7530.014-88.771-0.6860.8773.447-0.015.533-89.039
1991A1A_A245A246:G229A230_1A1A0.112-1.1073.265-2.236-3.311118.993-0.61-0.0873.281-1.9211.297119.034
11001A1A_A246G247:U228G229_1A1A0.249-0.6943.643-7.3034.41258.859-0.946-0.6583.5374.4647.38959.42
11051A1A_A251G457:C223U224_1A1A3.2851.8982.03161.262-71.06-84.343-0.7941.995-0.29735.7881.199-177.202
11141A1A_A259A260:G284U285_1A1A3.88-0.0462.911-9.7488.4846.814-2.762-18.23-1.25240.90947.00114.603
11521A1A_A302C303:G385U386_1A1A0.519-0.8482.558-21.659.2217.496-3.014-4.1610.89521.10549.55729.249
11561A1A_A306U308:A381U382_1A1A2.174-2.4113.16-0.16-5.54684.358-1.665-1.623.28-4.1260.11984.506
11621A1A_A313G314:U374G375_1A1A-0.003-0.8593.221-3.1196.51556.675-1.246-0.1633.116.8323.2757.095
11661A1A_A318G319:C367G368_1A1A4.255-1.5844.355-8.93920.3459.183-2.6-4.5553.10819.8528.72562.861
11721A1A_A324G349:C361G362_1A1A-4.781-4.6342.709-3.752-6.62795.686-3.0183.1613.088-4.4652.52795.915
11711A1A_A346A324:G362U363_1A1A-2.738-0.8945.21920.197-5.802-41.6012.009-0.4335.7377.61426.504-46.396
11241A1A_A388G389:C295U296_1A1A-1.331-1.5633.159-1.1226.14935.184-3.3772.0182.89310.0741.83935.718
11991A1A_A401A428:U400G427_1A1A-4.5752.9683.252-175.54-15.97747.3061.736-0.4745.232-8.0988.883176.579
12001A1A_A428A429:A450U400_1A1A1.495-3.0393.198-5.5914.181-87.2521.8650.9493.633-10.211-4.025-88.309
11421A1A_A439G2417:A2424A2423_1A1A5.7861.311-4.0288.0387.458-27.648-0.1618.705-5.613-14.88616.043-29.703
11391A1A_A442C441:G2421U2420_1A1A-0.2111.24-3.1690.662-11.256-33.711-3.534-0.434-2.62918.7681.104-35.495
1231A1A_A480G35:C471G472_1A1A-1.883-2.271-0.601129.999-108.52515.732-1.3290.719-0.073-57.208-68.528169.445
12011A1A_A483U485:A496A497_1A1A2.778-1.9981.248116.234130.393-72.040.6781.6770.446-66.01458.846-175.697
12031A1A_A486C487:G494G495_1A1A0.204-0.4733.26-4.925.9460.519-0.747-0.4343.1825.8684.86160.963
12051A1A_A509C510:G521A522_1A1A1.117-1.3333.355-0.8955.17264.547-1.464-1.0813.2374.8350.83664.737
11861A1A_A526A530:A506A503_1A1A-0.4630.6916.3474.41-0.473-68.47-0.579-0.0926.3670.423.915-68.596
11881A1A_A528C534:G507A505_1A1A1.903-2.77-5.209-167.84123.85768.077-1.0151.681-4.80612.25286.197171.326
11871A1A_A530A528:A505A506_1A1A0.5040.0283.172-4.886-2.675135.0250.032-0.3033.162-1.4482.643135.081
12101A1A_A532G523:G531A508_1A1A4.9082.073-1.964-157.98766.976-86.91-0.9852.5821.337-33.999-80.199-173.903
12111A1A_A554G2045:C2062U2063_1A1A1.179-2.053.444-2.6220.68680.505-1.604-0.9843.3960.5312.02980.543
12211A1A_A561C562:G579U580_1A1A0.221-1.0663.11-1.3275.11930.704-2.887-0.6452.8879.5782.48431.145
12291A1A_A598U599:C588U589_1A1A-1.04-2.1763.219-9.8113.47435.245-3.9290.3153.1655.58815.78236.703
12321A1A_A601G2040:C556G586_1A1A0.552-4.6063.568-1.31711.68-1.956-13.216-1.3315.163-80.078-9.031-11.915
12531A1A_A613C614:G713U714_1A1A0.44-0.8763.2613.76815.21431.641-3.598-0.1952.61626.002-6.44135.221
12641A1A_A626G627:C649G650_1A1A-2.13-3.3242.6386.064-121.05388.902-0.7541.7542.91-64.254-45.682157.675
12691A1A_A632G633:C643G644_1A1A1.106-0.5743.734-5.1527.67860.263-0.979-1.3673.5497.5995.09960.902
12741A1A_A662G663:C675G676_1A1A-1.116-3.9242.692.063-123.3374.092-0.7661.4843.551-65.752-49.082159.236
12821A1A_A722A723:A849U850_1A1A0.091-1.332.9373.249-5.06741.302-1.3760.1873.07-7.137-4.57741.72
12831A1A_A723A724:A847A849_1A1A5.918-0.0554.18-15.61118.932-65.929-0.9564.345.157-16.808-13.859-69.861
12841A1A_A724C725:G846A847_1A1A0.409-1.1563.09-0.72-6.074120.738-0.611-0.2413.122-3.4930.414120.831
12921A1A_A736G737:C819U820_1A1A0.396-1.3293.116-0.66910.7630.115-4.141-0.8282.49619.9231.23931.944
13011A1A_A765C766:G759G760_1A1A2.045-1.0173.152-4.31310.82465.526-1.327-2.0252.8489.9193.95266.44
13051A1A_A769G770:C755U756_1A1A0.28-1.2873.6025.0578.75230.609-3.9720.4493.1316.039-9.26732.197
13101A1A_A774G775:U750G751_1A1A-1.1940.4752.537-0.97917.15446.059-0.4771.382.57321.0811.20448.996
13161A1A_A782C783:G807A808_1A1A0.871-1.3233.234-5.767-0.14963.239-1.252-1.0763.156-0.1425.48863.475
13321A1A_A824G825:C833U834_1A1A-0.406-2.0043.348-2.608-2.77827.308-3.4860.1763.553-5.8485.4927.567
13391A1A_A882G883:U988U869_1A1A2.912-0.9522.704-11.35714.39250.325-1.702-3.7491.74116.31512.87453.355
13441A1A_A888G889:C981U982_1A1A0.366-1.543.3082.34410.14628.437-4.878-0.2572.63619.832-4.58130.246
13491A1A_A896C897:G973G974_1A1A-0.092-0.6263.667-6.63911.83264.002-1.124-0.223.5111.0336.19165.275
13611A1A_A908G909:C961G962_1A1A0.02-0.7153.598-2.8575.61664.484-0.926-0.153.5285.252.67164.758
13631A1A_A910G911:C958U959_1A1A0.04-1.6223.3114.5846.64233.469-3.7450.6232.92511.33-7.81934.401
13671A1A_A917U918:G952U953_1A1A1.191-1.8613.389-1.3685.31929.457-4.676-2.582.95810.3482.6629.953
13691A1A_A919G920:C950U951_1A1A0.341-1.1913.1660.6447.94931.848-3.374-0.52.80114.208-1.15132.807
13921A1A_A1018U1233:A866A867_1A1A2.021-2.9010.69124.976121.515-16.5471.0431.4330.667-62.45464.233-174.372
14161A1A_A1056G1181:C1053C1054_1A1A0.636.4522.522-14.178-1.542-170.245-3.2360.3032.5360.774-7.114-170.321
14201A1A_A1074A1075:G1171A1172_1A1A-2.0771.5723.273-8.106-10.906-63.088-1.008-2.2963.21810.297-7.653-64.387
14211A1A_A1075G1076:C1170G1171_1A1A1.548-0.4823.95-1.9216.56162.108-1.302-1.5583.68615.7521.82664.091
14241A1A_A1078G1080:C1167G1168_1A1A-1.336-3.3653.4911.521.85635.752-5.7452.3973.263.019-2.47335.83
14351A1A_A1094C1095:G2764G1156_1A1A-3.603-3.2792.733-20.65611.47325.58-7.3172.7713.07321.06237.91934.689
14371A1A_A1096G1097:U1154C1155_1A1A1.063-0.8333.9511.5249.46727.037-4.199-1.7443.51719.488-3.13728.657
14411A1A_A1100G1101:C1150U1151_1A1A2.034-0.5684.08711.0614.01528.195-4.104-1.0973.90525.761-20.3333.275
14491A1A_A1103G1104:C1126U1127_1A1A-1.137-2.423.754-9.8863.96423.677-6.665-0.6373.4959.09422.68125.931
14481A1A_A1132A1103:U1127U1128_1A1A-3.419-3.10.35486.442-145.716147.593-1.4931.7450.596-73.038-43.328177.053
14561A1A_A1188G1190:C1064U1065_1A1A-2.363-3.04-0.74991.826-143.4487.54-1.3331.3091.234-75.531-48.35170.342
14611A1A_A1194G1195:C1059U1060_1A1A0.861-2.1833.3616.02610.96326.665-6.488-0.4952.42822.278-12.24729.406
14681A1A_A1201G1203:C1044U1045_1A1A2.145-2.7262.894-6.731-2.9569.986-2.276-2.0692.803-2.5655.85270.322
13941A1A_A1234G1235:C864G865_1A1A1.022-1.2353.3370.5954.97555.786-1.602-1.0543.2355.305-0.63555.992
13991A1A_A1239G1240:C859U860_1A1A0.463-2.1993.2083.3774.6724.816-6.232-0.1522.7910.684-7.72625.466
14091A1A_A1249G1251:U1286A1287_1A1A-0.5345.67-1.105-88.079-142.151125.0692.4080.535-3.065-71.68344.416174.119
14851A1A_A1258A1259:G1281G1282_1A1A-0.4290.052.901-8.9116.91229.135-1.103-0.7452.84413.13516.93431.197
14861A1A_A1259G1260:U1280G1281_1A1A0.154-0.9683.391-8.2387.34455.402-1.446-0.6363.1987.8128.76356.405
12361A1A_A1300G1302:C607G608_1A1A1.504-0.6513.827-6.51918.57153.134-1.865-2.0043.26120.0037.02256.413
12431A1A_A1308U1309:U2038U2039_1A1A-0.398-1.1113.7330.28814.73647.072-2.5460.5023.26517.943-0.3549.2
14951A1A_A1314A1315:U2033G2034_1A1A0.328-0.8453.165-4.2573.87358.187-1.059-0.5493.083.9714.36658.446
14961A1A_A1315C1316:G2032U2033_1A1A-0.475-1.4893.556-2.79912.83937.811-3.6910.3662.94319.124.16839.95
15021A1A_A1332C1335:G1327U1328_1A1A1.304-1.9133.016-1.1181.17584.222-1.452-0.9962.980.8760.83484.234
15271A1A_A1347G1349:C1671G1672_1A1A-3.605-0.037-0.44769.975-149.866-61.7240.173-1.7411.04778.14136.485-167.474
15311A1A_A1354G1355:C1651A1654_1A1A4.179-2.672.26625.66118.887-21.4083.0857.727-0.183-33.75845.865-38.231
15211A1A_A1363C1364:G1380U1381_1A1A0.234-1.1473.0143.47111.34134.258-3.2380.0492.53118.576-5.68536.195
15351A1A_A1388C1391:G1647U1648_1A1A1.378-1.0932.927-12.9523.6475.571-0.973-1.4382.6522.94810.4976.583
15421A1A_A1400G1401:C1422G1423_1A1A1.448-0.1863.898-4.91311.20264.322-0.716-1.5793.71810.4234.57165.352
15471A1A_A1405A1406:G1417U1418_1A1A-0.865-2.5764.034129.301-102.942111.666-0.5391.3793.865-52.256-65.636171.746
15481A1A_A1406G1407:C1416G1417_1A1A1.088-0.9613.768-1.53612.84361.323-1.58-1.1263.49912.4431.48862.542
15521A1A_A1441C1444:G1435U1436_1A1A2.084-1.7083.1970.575-2.8677.642-1.282-1.6453.261-2.281-0.45877.689
15671A1A_A1458G1459:C1635U1636_1A1A-0.054-1.3323.227-0.0278.37128.787-4.1860.12.73916.4050.05229.955
15731A1A_A1465G1467:C1624U1625_1A1A2.438-1.1883.402-7.7210.99664.459-1.149-2.5953.1080.9317.21164.877
15801A1A_A1473C1474:A1617A1618_1A1A-1.594.063-1.569-92.842-150.842-88.081-2.171-0.7090.79775.794-46.651-177.933
16041A1A_A1500C2715:G1503A1504_1A1A0.701-5.4422.282-1.1886.11116.016-3.249-0.4212.0953.6010.7116.122
16291A1A_A1532G1533:C1548U1549_1A1A-0.202-1.4073.071-3.5713.01927.618-4.841-0.2162.20825.4366.97530.683
16221A1A_A1574A1575:G1588A1589_1A1A-0.79-0.9533.0466.7112.745118.243-0.580.5223.0021.598-3.908118.38
16231A1A_A1575G1576:U1587G1588_1A1A0.682-0.0183.88-10.72812.93257.722-0.773-1.3093.63513.09410.86259.915
15941A1A_A1600G1602:C1483U1484_1A1A3.002-2.1353.1430.327-2.97481.063-1.568-2.3013.217-2.288-0.25181.108
15981A1A_A1605G1607:U1479A1480_1A1A-4.291.3013.857-122.074-118.772-64.1190.135-2.9590.21860.967-62.661-171.798
16011A1A_A1609G1610:C1476U1477_1A1A0.057-0.9883.456-0.7023.38635.6-2.118-0.1983.355.5221.14535.762
16351A1A_A1702C1703:G2026A2027_1A1A0.559-1.1953.1260.2478.59265.959-1.41-0.5012.977.857-0.22666.454
16431A1A_A1711A1712:U2017C2018_1A1A0.252-0.5493.208-3.9381.168122.802-0.323-0.1783.1990.6652.242122.843
16441A1A_A1712G1713:C2016U2017_1A1A0.924-2.0023.297-1.5049.84624.716-6.636-2.3572.28421.93.34626.618
16461A1A_A1716U2013:A1715U2015_1A1A0.324-3.432-3.263-165.939-34.941-24.7251.3611.879-1.08318.314-86.974-169.82
16621A1A_A1736A1737:G1744A1745_1A1A-0.402-2.3853.2685.31-8.696110.827-1.3410.3083.374-5.275-3.221111.139
16631A1A_A1737C1738:G1743G1744_1A1A1.102-1.0193.357-0.7515.37762.289-1.623-1.0723.04614.6290.71463.977
16741A1A_A1780G1781:C1755U1756_1A1A1.117-1.9733.4862.68513.31327.987-6.119-1.5952.41525.699-5.18231.049
16771A1A_A1804A1860:U1740A1999_1A1A4.114-0.334-0.499117.976124.715124.047-0.192-2.0350.76962.71-59.322176.097
16851A1A_A1814G2600:C2618G2619_1A1A-1.593-4.6273.2564.77917.054-45.4813.956-1.4684.741-21.1375.923-48.637
16931A1A_A1822G1823:C1858G1859_1A1A0.668-0.2954.886-16.62625.63163.542-1.624-1.4714.25723.00114.9269.806
17021A1A_A1833A1834:G1845A1846_1A1A-0.0810.1882.974-4.212.201117.3840.090.0082.9771.2882.463117.443
17031A1A_A1834C1835:G1844G1845_1A1A0.076-0.424.122-12.12920.79264.01-1.369-0.6473.78318.92811.04267.934
16781A1A_A1860C1861:G1997U1740_1A1A5.341-1.0493.908-3.0647.19182.046-1.004-4.1453.6575.4662.32982.352
17211A1A_A1885G1886:C1909G1910_1A1A0.37-0.9373.878-5.77314.39659.884-1.691-0.6723.54614.1655.6861.679
17261A1A_A1890G1891:C1904G1905_1A1A0.875-0.63.5451.6313.17462.9-0.728-0.7593.5333.039-1.56262.991
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131892a2a_U1512A1513:U1522G1523_2a2a0.218-1.7742.9722.75615.16427.048-5.5740.0041.76529.57-5.37431.06

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.