6CHV: Base Pair Morphology Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6CHV PDB ID: 6CHV

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	I_DA3:DT19_J	-0.28	-0.214	-0.23	-7.759	-3.436	2.187
1	6	I_DA6:DT16_J	-0.151	-0.144	0.198	-2.889	-18.339	-7.099
1	8	I_DA8:DT14_J	-0.243	0.126	0.235	3.097	-12.032	0.792
1	10	I_DA10:DT12_J	-0.194	-0.116	-0.575	-8.607	-8.021	6.984
1	13	I_DA13:DT9_J	-0.459	0.01	-0.258	-9.631	-14.006	1.623
1	17	I_DA17:DT5_J	0.3	0.043	-0.493	-7.508	-7.266	8.793
1	18	I_DA18:DT4_J	-0.324	-0.146	0.373	9.08	-1.25	-3.422
1	20	I_DA20:DT2_J	0.036	-0.176	-0.169	14.111	-6.277	7.079
1	7	I_DC7:DG15_J	0.122	-0.142	0.789	-7.283	-14.363	-0.665
1	9	I_DC9:DG13_J	0.226	0.163	-0.032	4.664	-13.03	4.824
1	11	I_DC11:DG11_J	-0.055	-0.165	-0.166	2.176	-16.432	4.88
1	12	I_DC12:DG10_J	0.602	-0.125	0.006	-0.435	-9.414	4.031
1	21	I_DC21:DG1_J	-0.042	-0.022	-0.265	11.168	-13.329	2.365
1	1	I_DG1:DC21_J	-0.038	-0.014	-0.187	-8.028	-14.001	-0.629
1	15	I_DG15:DC7_J	-0.212	0.025	0.355	1.934	-13.131	-0.671
1	2	I_DT2:DA20_J	-0.468	-0.193	-0.211	-10.639	-13.041	7.123
1	4	I_DT4:DA18_J	-0.128	-0.148	-0.016	2.948	-13.304	3.168
1	5	I_DT5:DA17_J	-0.333	-0.088	-0.491	10.726	-6.734	9.296
1	14	I_DT14:DA8_J	-0.255	-0.029	-0.151	2.808	-12.734	-2.309
1	16	I_DT16:DA6_J	-0.215	-0.057	0.241	0.439	-16.897	-5.526
1	19	I_DT19:DA3_J	0.391	-0.084	0.129	4.73	-6.964	5.2
1	24	E_DA3:DT19_F	-0.129	-0.137	-0.288	-7.248	-0.4	0.691
1	27	E_DA6:DT16_F	0.198	-0.096	0.761	5.793	-11.686	-7.268
1	29	E_DA8:DT14_F	0.214	-0.004	0.108	1.602	-12.273	0.129
1	31	E_DA10:DT12_F	0.04	-0.34	-0.673	-9.546	-12.278	0.137
1	34	E_DA13:DT9_F	-0.458	-0.223	-0.301	-9.221	-11.475	-2.581
1	38	E_DA17:DT5_F	0.579	-0.213	-0.209	-5.809	-7.28	7.003
1	39	E_DA18:DT4_F	-0.071	-0.352	0.157	2.844	-4.601	2.582
1	41	E_DA20:DT2_F	0.101	-0.114	-0.174	13.821	-10.415	11.371
1	28	E_DC7:DG15_F	0.702	-0.01	0.588	-4.619	-13.612	0.459
1	30	E_DC9:DG13_F	0.901	-0.072	0.143	2.742	-9.87	4.072
1	32	E_DC11:DG11_F	0.701	-0.126	0.015	-6.516	-12.954	2.231
1	33	E_DC12:DG10_F	0.906	-0.062	-0.08	-1.253	-6.807	7.824
1	42	E_DC21:DG1_F	0.281	0.012	-0.451	13.975	-9.506	3.683
1	22	E_DG1:DC21_F	-0.404	-0.294	-0.214	-10.8	-12.599	-1.106
1	36	E_DG15:DC7_F	-0.578	-0.164	0.296	1.542	-14.798	-0.918
1	23	E_DT2:DA20_F	-0.313	-0.178	0.165	-14.485	-11.795	8.764
1	25	E_DT4:DA18_F	0.49	-0.237	0.102	0.147	-4.492	-2.368
1	26	E_DT5:DA17_F	0.047	-0.033	0.037	7.34	-3.231	7.656
1	35	E_DT14:DA8_F	0.292	-0.008	-0.03	-0.871	-11.768	0.24
1	37	E_DT16:DA6_F	-0.063	-0.137	0.4	-1.98	-15.445	-5.64
1	40	E_DT19:DA3_F	0.748	-0.167	-0.158	10.029	-2.939	3.45
1	45	K_DA3:DT19_L	-0.546	-0.342	-0.42	-11.479	-1.744	0.373
1	48	K_DA6:DT16_L	0.074	0.123	0.511	1.924	-13.931	-6.519
1	50	K_DA8:DT14_L	0.473	0.06	0.303	6.845	-12.547	1.771
1	52	K_DA10:DT12_L	-0.364	-0.254	-0.522	-5.927	-9.365	-1.239
1	55	K_DA13:DT9_L	-0.314	0.118	0.229	-1.352	-15.452	2.102
1	59	K_DA17:DT5_L	-0.119	-0.076	-0.155	-3.089	-4.597	7.653
1	60	K_DA18:DT4_L	0.314	-0.007	0.31	3.122	-13.805	1.56
1	62	K_DA20:DT2_L	0.206	-0.235	0.113	8.174	-14.545	8.857
1	49	K_DC7:DG15_L	0.161	-0.22	0.826	-10.126	-13.718	-0.607
1	51	K_DC9:DG13_L	0.393	0.013	0.197	0.177	-15.01	3.513
1	53	K_DC11:DG11_L	-0.012	-0.046	0.08	-1.215	-11.7	6.196
1	54	K_DC12:DG10_L	0.482	0.144	-0.244	4.13	-8.553	11.267
1	63	K_DC21:DG1_L	0.385	-0.49	-0.123	7.669	-14.566	-5.984
1	43	K_DG1:DC21_L	-0.781	-0.176	-0.534	-15.141	-16.278	-3.218
1	57	K_DG15:DC7_L	-0.415	-0.119	0.193	-1.345	-15.637	-3.243
1	44	K_DT2:DA20_L	-0.182	-0.089	-0.094	-12.367	-12.475	4.864
1	46	K_DT4:DA18_L	-0.023	-0.276	0.21	-5.397	-3.461	-3.063
1	47	K_DT5:DA17_L	-0.616	-0.093	-0.383	7.375	-7.571	6.825
1	56	K_DT14:DA8_L	0.133	0.021	-0.114	1.042	-13.936	-2.965
1	58	K_DT16:DA6_L	-0.195	-0.25	0.255	0.345	-19.64	-3.643
1	61	K_DT19:DA3_L	0.225	-0.202	0.351	-0.216	-6.62	-0.636

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.