6CHV: Base Pair Morphology Step Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6CHV PDB ID: 6CHV

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	II_DA3DT4:DA18DT19_JJ	-0.402	-0.82	3.153	-0.22	-2.296	33.506	-1.053	0.66	3.203	-3.977	0.38	33.583
1	6	II_DA6DC7:DG15DT16_JJ	0.282	-0.539	3.449	-3.198	-1.239	36.482	-0.679	-0.911	3.429	-1.974	5.095	36.638
1	8	II_DA8DC9:DG13DT14_JJ	0.603	-0.608	3.258	1.629	8.18	31.418	-2.491	-0.799	3.034	14.782	-2.945	32.479
1	10	II_DA10DC11:DG11DT12_JJ	-0.464	-0.078	2.953	-4.031	5.813	30.949	-1.115	0.174	2.926	10.718	7.432	31.727
1	13	II_DA13DT14:DA8DT9_JJ	-0.519	-0.582	2.863	-2.404	6.647	29.999	-2.216	0.573	2.707	12.623	4.565	30.802
1	17	II_DA17DA18:DT4DT5_JJ	-0.421	-0.124	2.788	-8.866	2.853	31.671	-0.639	-0.568	2.78	5.092	15.822	32.978
1	18	II_DA18DT19:DA3DT4_JJ	0.809	-1.091	3.54	2.206	-5.207	35.442	-0.94	-0.961	3.7	-8.486	-3.595	35.876
1	20	II_DA20DC21:DG1DT2_JJ	-0.654	-1.559	3.361	-3.599	1.746	32.913	-3.033	0.525	3.327	3.067	6.323	33.149
1	7	II_DC7DA8:DT14DG15_JJ	0.473	0.508	3.02	7.345	1.483	35.935	0.617	0.195	3.072	2.371	-11.748	36.682
1	9	II_DC9DA10:DT12DG13_JJ	0.602	0.855	3.806	5.158	4.42	37.227	0.641	-0.139	3.924	6.853	-7.999	37.82
1	11	II_DC11DC12:DG10DG11_JJ	0.111	-0.292	3.461	0.206	9.322	34.206	-1.916	-0.15	3.272	15.494	-0.342	35.417
1	12	II_DC12DA13:DT9DG10_JJ	-0.43	1.058	3.679	-0.619	1.667	35.209	1.466	0.605	3.73	2.753	1.023	35.252
1	1	II_DG1DT2:DA20DC21_JJ	0.604	-1.695	3.343	3.524	4.571	28.766	-4.327	-0.438	3.093	9.084	-7.004	29.327
1	15	II_DG15DT16:DA6DC7_JJ	-0.264	-0.699	3.333	1.055	-0.361	33.438	-1.153	0.635	3.331	-0.628	-1.833	33.456
1	2	II_DT2DA3:DT19DA20_JJ	-0.349	-1.065	3.325	1.768	13.626	29.416	-4.183	0.921	2.569	25.175	-3.266	32.402
1	4	II_DT4DT5:DA17DA18_JJ	0.453	-0.026	3.073	6.094	4.238	31.906	-0.742	0.199	3.076	7.581	-10.903	32.736
1	5	II_DT5DA6:DT16DA17_JJ	-2.041	0.824	3.734	-10.574	6.996	36.027	0.151	1.446	4.23	10.904	16.48	38.123
1	14	II_DT14DG15:DC7DA8_JJ	-0.276	0.55	3.432	-5.991	4.258	38.365	0.276	-0.356	3.474	6.407	9.015	39.037
1	16	II_DT16DA17:DT5DA6_JJ	1.847	0.872	3.582	10.454	5.668	38.246	0.501	-1.273	4.016	8.406	-15.504	39.985
1	19	II_DT19DA20:DT2DA3_JJ	0.098	-1.219	2.999	-0.845	16.639	26.975	-4.755	-0.307	1.935	32.078	1.63	31.624
1	23	EE_DA3DT4:DA18DT19_FF	-0.448	-0.946	3.241	-2.994	-0.514	34.636	-1.504	0.293	3.281	-0.862	5.018	34.764
1	26	EE_DA6DC7:DG15DT16_FF	0.332	-0.577	3.676	2.023	0.886	35.702	-1.084	-0.213	3.674	1.443	-3.295	35.768
1	28	EE_DA8DC9:DG13DT14_FF	0.669	-0.631	3.266	0.443	8.393	32.656	-2.424	-1.084	3.024	14.626	-0.772	33.692
1	30	EE_DA10DC11:DG11DT12_FF	-0.235	-0.202	3.205	-6.588	8.736	33.767	-1.59	-0.563	3.052	14.573	10.989	35.446
1	33	EE_DA13DT14:DA8DT9_FF	-0.316	-0.751	3.063	-2.57	6.836	32.262	-2.381	0.156	2.864	12.109	4.553	33.057
1	37	EE_DA17DA18:DT4DT5_FF	-0.261	-0.055	3.005	-2.93	1.388	29.674	-0.374	-0.055	3.01	2.7	5.699	29.847
1	38	EE_DA18DT19:DA3DT4_FF	0.681	-0.856	3.224	2.447	1.949	36.062	-1.648	-0.757	3.213	3.142	-3.944	36.193
1	40	EE_DA20DC21:DG1DT2_FF	-0.511	-1.583	3.27	-2.204	5.991	30.772	-4.003	0.547	2.946	11.139	4.099	31.412
1	27	EE_DC7DA8:DT14DG15_FF	0.357	0.665	3.228	5.023	0.282	35.93	1.029	0.127	3.252	0.455	-8.093	36.269
1	29	EE_DC9DA10:DT12DG13_FF	0.087	0.896	3.695	7.48	3.638	35.422	0.855	1.056	3.707	5.879	-12.088	36.355
1	31	EE_DC11DC12:DG10DG11_FF	0.329	-0.554	3.117	1.634	4.68	32.03	-1.77	-0.318	3.02	8.419	-2.94	32.402
1	32	EE_DC12DA13:DT9DG10_FF	-1.081	0.806	3.63	-1.801	3.409	33.157	0.765	1.544	3.744	5.949	3.144	33.374
1	21	EE_DG1DT2:DA20DC21_FF	0.754	-1.777	3.324	1.399	5.207	32.315	-4.03	-1.1	3.037	9.275	-2.493	32.75
1	35	EE_DG15DT16:DA6DC7_FF	-0.257	-0.566	3.379	-0.59	0.514	36.683	-0.972	0.325	3.374	0.816	0.937	36.692
1	22	EE_DT2DA3:DT19DA20_FF	-0.474	-1.036	3.171	6.391	9.925	30.683	-3.383	1.837	2.574	17.945	-11.556	32.824
1	24	EE_DT4DT5:DA17DA18_FF	0.534	-0.138	3.116	4.628	3.234	32.422	-0.775	-0.183	3.132	5.738	-8.211	32.897
1	25	EE_DT5DA6:DT16DA17_FF	-1.889	0.414	3.322	-9.872	3.513	36.151	0.139	1.52	3.716	5.519	15.511	37.59
1	34	EE_DT14DG15:DC7DA8_FF	-0.405	0.495	3.299	-5.541	2.039	34.485	0.509	-0.181	3.344	3.408	9.263	34.972
1	36	EE_DT16DA17:DT5DA6_FF	1.758	0.747	3.443	9.533	1.519	38.675	0.899	-1.344	3.78	2.251	-14.128	39.817
1	39	EE_DT19DA20:DT2DA3_FF	0.329	-1.058	3.226	-1.416	14.038	26.315	-4.72	-0.908	2.351	28.388	2.864	29.8
1	43	KK_DA3DT4:DA18DT19_LL	-0.675	-1.044	3.265	-4.473	-1.616	34.045	-1.509	0.43	3.368	-2.743	7.593	34.366
1	46	KK_DA6DC7:DG15DT16_LL	0.353	-0.628	3.642	-1.911	-0.208	33.863	-1.039	-0.946	3.621	-0.357	3.277	33.916
1	48	KK_DA8DC9:DG13DT14_LL	0.33	-0.785	3.42	-0.089	3.407	33.252	-1.948	-0.589	3.324	5.935	0.155	33.421
1	50	KK_DA10DC11:DG11DT12_LL	0.131	-0.452	3.139	-5.329	7.432	32.74	-1.895	-1.03	2.913	12.874	9.231	33.96
1	53	KK_DA13DT14:DA8DT9_LL	-0.57	-0.753	3.187	0.824	5.296	32.905	-2.155	1.126	3.018	9.272	-1.444	33.327
1	57	KK_DA17DA18:DT4DT5_LL	-0.124	-0.083	3.093	-4.327	-0.848	34.861	-0.017	-0.407	3.087	-1.408	7.187	35.13
1	58	KK_DA18DT19:DA3DT4_LL	0.148	-1.265	3.451	1.614	-0.13	32.951	-2.205	0.029	3.459	-0.228	-2.843	32.99
1	60	KK_DA20DC21:DG1DT2_LL	-1.072	-1.832	3.225	-2.355	5.17	33.482	-3.929	1.475	2.984	8.894	4.051	33.947
1	47	KK_DC7DA8:DT14DG15_LL	0.321	0.276	2.876	5.345	0.832	36.75	0.335	0.129	2.898	1.31	-8.421	37.133
1	49	KK_DC9DA10:DT12DG13_LL	0.305	0.481	3.661	8.335	3.001	33.597	0.282	0.942	3.658	5.084	-14.118	34.713
1	51	KK_DC11DC12:DG10DG11_LL	0.209	-0.211	3.148	3.922	6.319	33.23	-1.329	0.245	3.062	10.88	-6.753	34.03
1	52	KK_DC12DA13:DT9DG10_LL	-1.016	0.826	3.595	-7.784	3.598	33.194	0.752	0.318	3.795	6.172	13.35	34.254
1	41	KK_DG1DT2:DA20DC21_LL	0.127	-1.665	3.177	-0.537	5.142	33.997	-3.567	-0.294	2.899	8.732	0.912	34.376
1	55	KK_DG15DT16:DA6DC7_LL	-0.033	-0.392	3.27	-0.873	2.19	35.331	-0.966	-0.073	3.24	3.603	1.437	35.407
1	42	KK_DT2DA3:DT19DA20_LL	-0.25	-1.123	3.359	2.365	14.92	27.099	-4.82	0.899	2.399	29.145	-4.619	30.956
1	44	KK_DT4DT5:DA17DA18_LL	0.569	-0.139	2.969	6.738	2.365	31.366	-0.642	0.088	3.005	4.305	-12.265	32.149
1	45	KK_DT5DA6:DT16DA17_LL	-1.963	0.84	3.543	-11.634	3.653	40.124	0.726	1.314	3.995	5.181	16.501	41.863
1	54	KK_DT14DG15:DC7DA8_LL	-0.424	0.545	3.423	-2.848	1.814	34.883	0.617	0.252	3.469	3.016	4.736	35.041
1	56	KK_DT16DA17:DT5DA6_LL	1.909	0.815	3.435	8.243	2.802	37.15	0.849	-1.752	3.806	4.325	-12.724	38.122
1	59	KK_DT19DA20:DT2DA3_LL	0.54	-1.51	3.02	0.171	10.018	28.943	-4.546	-0.995	2.379	19.328	-0.33	30.593

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.