A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-Jul-2018 number of released structures: 9608
Search for released structures

NDB ID: 6CVP  PDB ID: 6CVP 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13D_DA4:DT7_E0.176-0.1320.133-2.671-5.252.064
16D_DA7:DT4_E-0.016-0.0930.210.646-14.2444.837
19D_DC10:DG1_E0.289-0.24-0.009-7.983-8.1922.549
15D_DG6:DC5_E-0.025-0.3290.0616.192-12.266-2.188
11D_DT2:DA9_E-0.212-0.1040.344-13.922-15.062.749
12D_DT3:DA8_E-0.055-0.195-0.167-1.13-8.446-0.319
14D_DT5:DA6_E0.008-0.057-0.0568.268-10.344.254
17D_DT8:DA3_E-0.218-0.170.1980.563-15.232.761
18D_DT9:DA2_E-0.226-0.1220.0060.968-13.43.775
112G_DA4:DT7_H-0.014-0.293-0.0780.455-10.40.708
115G_DA7:DT4_H0.048-0.124-0.112-6.179-7.0844.587
118G_DC10:DG1_H0.304-0.167-0.04-1.955-10.4952.407
114G_DG6:DC5_H-0.069-0.142-0.411-8.638-9.4130.76
110G_DT2:DA9_H-0.076-0.1280.223-14.767-10.907-0.59
111G_DT3:DA8_H-0.013-0.057-0.1941.776-3.5880.518
113G_DT5:DA6_H0.115-0.257-0.0953.619-8.4391.701
116G_DT8:DA3_H-0.252-0.0420.098-1.711-10.4661.073
117G_DT9:DA2_H-0.203-0.083-0.1563.558-14.5583.898

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.