A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 17-Oct-2018 number of released structures: 9817
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NDB ID: 6CY4  PDB ID: 6CY4 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18A_C7:G2_B0.306-0.1470.1253.035-10.652-0.563
19A_G8:CBV1_B-0.2090.010.5722.288-5.304-5.069
17A_U6:A3_B-0.257-0.210.2286.755-20.9181.149
12B_C7:G2_A0.526-0.1760.0813.754-14.4752.961
13B_G8:CBV1_A0.0930.0990.6515.283-6.1752.499
11B_U6:A3_A-0.3470.0270.2736.443-13.5613.047
16C_A3:U6_D0.372-0.1050.261-5.73-18.5460.969
114C_C7:G2_D0.349-0.318-0.0383.051-12.9370.512
14C_CBV1:G8_D-0.1020.0770.6-0.455-5.187-0.466
15C_G2:C7_D-0.337-0.077-0.047-1.12-10.4641.81
115C_G8:CBV1_D-0.0150.0730.4442.706-2.2292.566
113C_U6:A3_D-0.1910.1080.1377.094-12.813.415
112E_A3:U6_F0.0650.0230.206-6.09-11.8013.523
117E_C7:G2_F0.24-0.1140.0542.745-10.3392.894
110E_CBV1:G8_F0.478-0.0570.876-4.346-8.6311.041
111E_G2:C7_F-0.323-0.1090.1230.486-12.8593.533
118E_G8:CBV1_F-0.271-0.0550.3151.574-5.19-2.4
116E_U6:A3_F-0.241-0.220.08112.631-15.8883.778
121G_A3:U6_H-0.007-0.180.361-0.491-15.6941.69
123G_C7:G2_H0.368-0.150.0344.775-19.9283.933
119G_CBV1:G8_H0.1390.1570.447-2.175-11.2764.624
120G_G2:C7_H-0.125-0.0730.256-0.744-8.5252.271
124G_G8:CBV1_H-0.1240.310.3471.765-2.972-4.336
122G_U6:A3_H-0.2610.0550.5187.092-21.2495.234

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.