A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 6DF5  PDB ID: 6DF5 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
112D_DA12:DT25_E0.328-0.0430.25211.703-18.5841.71
113D_DA13:DT24_E0.111-0.190.55311.12-15.1-0.439
115D_DA15:DT22_E0.201-0.3160.4645.253-15.0344.529
116D_DA16:DT21_E0.315-0.113-0.081-5.265-21.768-1.659
13D_DC3:DG34_E-0.476-0.0980.0918.047-21.851-0.569
16D_DC6:DG31_E0.092-0.1050.27-17.231-10.951-1.962
17D_DC7:DG30_E0.042-0.1810.59-21.643-3.386-1.139
110D_DC10:DG27_E0.326-0.1520.285-0.501-11.7861.017
111D_DC11:DG26_E0.375-0.168-0.0831.3264.2575.035
117D_DC17:DG20_E-0.18-0.1180.269-7.221-19.271-1.248
12D_DG2:DC35_E0.382-0.0760.51617.627-11.453-1.475
19D_DG9:DC28_E-0.259-0.1960.1530.154-10.526-1.184
118D_DG18:DC19_E-1.608-0.786-0.389-6.794-8.3420.528
11D_DT1:DA36_E-1.425-0.3420.142-4.816-7.5852.675
14D_DT4:DA33_E-0.656-0.0520.145-4.969-18.8864.481
15D_DT5:DA32_E-0.027-0.192-0.162-3.831-15.2485.65
18D_DT8:DA29_E0.04-0.1540.091-3.604-4.7761.057
114D_DT14:DA23_E-0.13-0.1160.25911.626-8.6655.85

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.