A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: 6DF8  PDB ID: 6DF8 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
112D_DA12:DT25_E-0.108-0.250.1437.106-16.3192.096
113D_DA13:DT24_E0.419-0.3050.4569.651-10.0270.274
115D_DA15:DT22_E0.723-0.2640.4293.446-11.4710.165
116D_DA16:DT21_E-0.287-0.2880.7323.986-10.53-2.338
13D_DC3:DG34_E-0.485-0.10.0267.152-16.584-0.976
16D_DC6:DG31_E0.229-0.1840.079-12.976-10.487-2.606
17D_DC7:DG30_E0.084-0.0820.693-22.944-3.746-2.638
110D_DC10:DG27_E0.4-0.2670.325-1.44-9.406-0.692
111D_DC11:DG26_E-0.117-0.34-0.07-0.4436.494-0.503
117D_DC17:DG20_E0.781-0.29-0.1912.885-11.2060.159
12D_DG2:DC35_E1.14-0.2070.31114.463-12.674-0.897
19D_DG9:DC28_E-0.143-0.1440.2232.417-6.873-1.217
118D_DG18:DC19_E-0.333-0.42-1.463-22.417-28.04616.024
11D_DT1:DA36_E-0.124-0.172-0.053-5.87-1.5652.15
14D_DT4:DA33_E-0.638-0.1150.20.201-15.1867.308
15D_DT5:DA32_E-0.013-0.0730.008-1.076-6.5623.137
18D_DT8:DA29_E-0.152-0.180.181-3.215-4.695-0.966
114D_DT14:DA23_E-0.144-0.0670.3337.421-7.2891.575

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.