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As of 11-Dec-2019 number of released structures: 10507
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NDB ID:
6DF8
PDB ID:
6DF8
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
12
D_DA12:DT25_E
-0.108
-0.25
0.143
7.106
-16.319
2.096
1
13
D_DA13:DT24_E
0.419
-0.305
0.456
9.651
-10.027
0.274
1
15
D_DA15:DT22_E
0.723
-0.264
0.429
3.446
-11.471
0.165
1
16
D_DA16:DT21_E
-0.287
-0.288
0.732
3.986
-10.53
-2.338
1
3
D_DC3:DG34_E
-0.485
-0.1
0.026
7.152
-16.584
-0.976
1
6
D_DC6:DG31_E
0.229
-0.184
0.079
-12.976
-10.487
-2.606
1
7
D_DC7:DG30_E
0.084
-0.082
0.693
-22.944
-3.746
-2.638
1
10
D_DC10:DG27_E
0.4
-0.267
0.325
-1.44
-9.406
-0.692
1
11
D_DC11:DG26_E
-0.117
-0.34
-0.07
-0.443
6.494
-0.503
1
17
D_DC17:DG20_E
0.781
-0.29
-0.191
2.885
-11.206
0.159
1
2
D_DG2:DC35_E
1.14
-0.207
0.311
14.463
-12.674
-0.897
1
9
D_DG9:DC28_E
-0.143
-0.144
0.223
2.417
-6.873
-1.217
1
18
D_DG18:DC19_E
-0.333
-0.42
-1.463
-22.417
-28.046
16.024
1
1
D_DT1:DA36_E
-0.124
-0.172
-0.053
-5.87
-1.565
2.15
1
4
D_DT4:DA33_E
-0.638
-0.115
0.2
0.201
-15.186
7.308
1
5
D_DT5:DA32_E
-0.013
-0.073
0.008
-1.076
-6.562
3.137
1
8
D_DT8:DA29_E
-0.152
-0.18
0.181
-3.215
-4.695
-0.966
1
14
D_DT14:DA23_E
-0.144
-0.067
0.333
7.421
-7.289
1.575
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.