6DF8: Base Pair Morphology Parameters

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As of 11-Dec-2019 number of released structures: 10507

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NDB ID: 6DF8 PDB ID: 6DF8

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	12	D_DA12:DT25_E	-0.108	-0.25	0.143	7.106	-16.319	2.096
1	13	D_DA13:DT24_E	0.419	-0.305	0.456	9.651	-10.027	0.274
1	15	D_DA15:DT22_E	0.723	-0.264	0.429	3.446	-11.471	0.165
1	16	D_DA16:DT21_E	-0.287	-0.288	0.732	3.986	-10.53	-2.338
1	3	D_DC3:DG34_E	-0.485	-0.1	0.026	7.152	-16.584	-0.976
1	6	D_DC6:DG31_E	0.229	-0.184	0.079	-12.976	-10.487	-2.606
1	7	D_DC7:DG30_E	0.084	-0.082	0.693	-22.944	-3.746	-2.638
1	10	D_DC10:DG27_E	0.4	-0.267	0.325	-1.44	-9.406	-0.692
1	11	D_DC11:DG26_E	-0.117	-0.34	-0.07	-0.443	6.494	-0.503
1	17	D_DC17:DG20_E	0.781	-0.29	-0.191	2.885	-11.206	0.159
1	2	D_DG2:DC35_E	1.14	-0.207	0.311	14.463	-12.674	-0.897
1	9	D_DG9:DC28_E	-0.143	-0.144	0.223	2.417	-6.873	-1.217
1	18	D_DG18:DC19_E	-0.333	-0.42	-1.463	-22.417	-28.046	16.024
1	1	D_DT1:DA36_E	-0.124	-0.172	-0.053	-5.87	-1.565	2.15
1	4	D_DT4:DA33_E	-0.638	-0.115	0.2	0.201	-15.186	7.308
1	5	D_DT5:DA32_E	-0.013	-0.073	0.008	-1.076	-6.562	3.137
1	8	D_DT8:DA29_E	-0.152	-0.18	0.181	-3.215	-4.695	-0.966
1	14	D_DT14:DA23_E	-0.144	-0.067	0.333	7.421	-7.289	1.575

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.