A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
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NDB ID: 6DF8  PDB ID: 6DF8 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
112DD_DA12DA13:DT24DT25_EE-0.0960.0953.178-4.872-5.40441.8190.666-0.3493.134-7.5026.76442.419
113DD_DA13DT14:DA23DT24_EE0.411-1.0523.3260.764-5.0129.849-0.957-0.6263.462-9.638-1.46930.266
115DD_DA15DA16:DT21DT22_EE-0.114-0.23.128-3.315-6.66432.9010.7-0.3233.105-11.5825.76133.71
116DD_DA16DC17:DG20DT21_EE0.024-0.5423.326.2391.82940.232-0.9840.6633.2612.638-8.99840.732
13DD_DC3DT4:DA33DG34_EE0.555-0.5083.4591.7352.3837.255-1.125-0.6253.4423.718-2.7137.367
16DD_DC6DC7:DG30DG31_EE0.235-0.1283.631-4.2183.84536.873-0.762-0.9833.5536.0346.6237.297
17DD_DC7DT8:DA29DG30_EE-0.7270.592.9134.1587.6622.07-0.8513.012.77619.08-10.35723.709
110DD_DC10DC11:DG26DG27_EE1.250.3613.3287.3633.86433.356-0.033-0.893.5356.605-12.58534.348
111DD_DC11DA12:DT25DG26_EE-0.9720.9653.161-2.2690.12636.1461.5351.2533.2170.2023.65236.215
117DD_DC17DG18:DC19DG20_EE0.5312.3353.80212.3315.91334.0530.9191.1834.37824.682-19.12439.406
12DD_DG2DC3:DG34DC35_EE-0.109-0.6653.3662.56-0.59823.184-1.4331.173.35-1.482-6.34323.331
19DD_DG9DC10:DG27DC28_EE0.178-0.6123.4310.1713.13431.423-1.73-0.2953.3575.769-0.31531.575
11DD_DT1DG2:DC35DA36_EE-0.2221.1882.89-4.9349.20539.7980.763-0.1823.08413.2487.10141.092
14DD_DT4DT5:DA32DA33_EE-0.02-0.2593.291.578-2.09335.695-0.1180.2613.295-3.409-2.5735.788
15DD_DT5DC6:DG31DA32_EE-0.122-0.5973.4941.373-1.09740.887-0.7250.3363.502-1.569-1.96540.923
18DD_DT8DG9:DC28DA29_EE-0.6911.1223.274-6.1976.7641.1840.8320.2943.4729.4688.6842.149
114DD_DT14DA15:DT22DA23_EE0.01-0.2883.365-1.016-1.90543.425-0.199-0.1153.373-2.5731.37343.476

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.