A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 6DFA  PDB ID: 6DFA 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
112D_DA12:DT25_E0.158-0.0720.39513.02-16.992.991
113D_DA13:DT24_E0.139-0.2180.50211.066-14.2130.5
115D_DA15:DT22_E0.025-0.2350.4246.605-11.5132.147
116D_DA16:DT21_E0.123-0.1440.1922.922-18.771-1.085
13D_DC3:DG34_E-0.169-0.1090.0967.05-18.282-1.604
16D_DC6:DG31_E0.173-0.1240.141-13.04-13.48-1.465
17D_DC7:DG30_E0.103-0.1830.444-19.28-2.369-0.686
110D_DC10:DG27_E0.237-0.1340.275-1.974-10.31-0.243
111D_DC11:DG26_E0.183-0.1970.0050.8212.8041.617
117D_DC17:DG20_E-0.038-0.1360.364-2.067-17.731-1.421
12D_DG2:DC35_E-0.347-0.1490.23512.294-6.417-0.031
19D_DG9:DC28_E-0.23-0.150.1362.801-10.495-0.471
118D_DG18:DC19_E-1.065-0.428-0.317-5.487-11.6290.893
11D_DT1:DA36_E0.132-0.1940.028-4.706-1.2224.095
14D_DT4:DA33_E-0.206-0.2070.105-2.459-18.1665.112
15D_DT5:DA32_E0.02-0.123-0.1921.445-14.0044.256
18D_DT8:DA29_E-0.066-0.142-0.026-0.04-4.3291.288
114D_DT14:DA23_E-0.605-0.1230.3997.954-8.0115.492

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.