A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
Search for released structures

NDB ID: 6DFA  PDB ID: 6DFA 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
112DD_DA12DA13:DT24DT25_EE-0.002-0.1333.289-2.012-4.68637.9160.391-0.2523.278-7.1723.07938.245
113DD_DA13DT14:DA23DT24_EE0.618-0.963.3711.376-6.18329.217-0.494-0.8953.52-12.079-2.68929.881
115DD_DA15DA16:DT21DT22_EE-0.204-0.433.3181.08-3.0237.039-0.2650.4673.335-4.743-1.69737.173
116DD_DA16DC17:DG20DT21_EE0.359-0.4013.339-0.648-1.35235.911-0.453-0.6763.345-2.1921.05135.942
13DD_DC3DT4:DA33DG34_EE0.507-0.7463.4163.4824.04637.138-1.71-0.3143.3516.312-5.43337.506
16DD_DC6DC7:DG30DG31_EE0.4530.0683.511-1.3833.02537.225-0.321-0.9023.4884.7272.16137.368
17DD_DC7DT8:DA29DG30_EE-0.5920.8622.8953.57410.83721.534-1.1392.4542.85926.724-8.81324.339
110DD_DC10DC11:DG26DG27_EE1.4840.5343.2777.7584.10834.4880.239-1.2293.5556.793-12.82935.555
111DD_DC11DA12:DT25DG26_EE-1.1161.1533.119-3.402-1.01536.7811.9511.3183.174-1.6055.37636.947
117DD_DC17DG18:DC19DG20_EE0.6941.0713.4338.0426.00631.0880.750.3123.63410.857-14.53832.63
12DD_DG2DC3:DG34DC35_EE-0.337-0.3263.375-0.0312.0333.213-0.9180.5833.353.5470.05433.273
19DD_DG9DC10:DG27DC28_EE0.44-0.5253.3540.425.97231.758-2.014-0.7163.20910.793-0.75832.303
11DD_DT1DG2:DC35DA36_EE-0.3931.282.907-3.5133.3432.5231.7390.1453.0455.9226.2332.873
14DD_DT4DT5:DA32DA33_EE0.126-0.0923.1713.263-1.54634.7270.0740.273.171-2.582-5.44834.909
15DD_DT5DC6:DG31DA32_EE-0.059-0.613.586-2.158-1.1140.231-0.748-0.1823.599-1.6123.13440.301
18DD_DT8DG9:DC28DA29_EE-0.7211.2363.329-5.0436.0440.6541.0650.4483.538.5967.17741.377
114DD_DT14DA15:DT22DA23_EE0.101-0.2763.1960.776-3.16342.464-0.068-0.0623.209-4.359-1.0742.583

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.