A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
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NDB ID: 6DFB  PDB ID: 6DFB 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
112D_DA12:DT25_E0.175-0.040.2278.078-18.0441.849
113D_DA13:DT24_E-0.006-0.2560.50211.101-15.005-0.973
115D_DA15:DT22_E0.074-0.2160.43.983-10.1681.383
116D_DA16:DT21_E0.549-0.1230.0642.821-16.942-0.836
13D_DC3:DG34_E0.068-0.1080.0416.738-15.861-0.965
16D_DC6:DG31_E0.208-0.1260.098-14.831-10.35-1.64
17D_DC7:DG30_E0.143-0.1050.567-22.7560.4180.708
110D_DC10:DG27_E0.226-0.1130.0761.756-9.75-0.858
111D_DC11:DG26_E0.139-0.075-0.193.2642.6312.417
117D_DC17:DG20_E-0.102-0.093-0.013.626-15.872-0.728
12D_DG2:DC35_E-0.292-0.1380.35610.767-6.04-0.492
19D_DG9:DC28_E-0.199-0.1140.0421.387-11.332-0.455
118D_DG18:DC19_E-1.174-0.5660.347-6.973-17.653-2.776
11D_DT1:DA36_E-0.191-0.1340.097-7.092-4.322.064
14D_DT4:DA33_E-0.534-0.1360.276-4.389-15.2194.077
15D_DT5:DA32_E-0.016-0.136-0.101-1.684-12.8853.388
18D_DT8:DA29_E-0.031-0.112-0.006-2.398-3.950.646
114D_DT14:DA23_E-0.104-0.2960.2568.089-10.4750.198

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.