A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
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NDB ID: 6DFB  PDB ID: 6DFB 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
112DD_DA12DA13:DT24DT25_EE0.067-0.2123.149-2.332-6.13236.8030.452-0.4023.133-9.6183.65837.363
113DD_DA13DT14:DA23DT24_EE0.504-0.9293.3371.382-3.77133.659-0.963-0.6333.435-6.484-2.37633.89
115DD_DA15DA16:DT21DT22_EE-0.6-0.4883.3341.123-4.78138.303-0.1341.053.35-7.25-1.70338.605
116DD_DA16DC17:DG20DT21_EE0.3-0.6973.1311.3880.4930.055-1.438-0.3063.130.944-2.67430.09
13DD_DC3DT4:DA33DG34_EE0.351-0.8833.5271.3680.90535.574-1.585-0.363.5151.481-2.23835.611
16DD_DC6DC7:DG30DG31_EE0.590.0613.53-2.4582.27337.891-0.217-1.2413.4853.4913.77638.033
17DD_DC7DT8:DA29DG30_EE-0.8090.7382.8735.29410.82422.379-1.1473.2242.68225.638-12.5425.381
110DD_DC10DC11:DG26DG27_EE1.6350.493.2778.0877.40534.343-0.341-1.4083.58512.163-13.28236.001
111DD_DC11DA12:DT25DG26_EE-1.1841.1583.326-2.816-0.05236.5081.8511.4873.403-0.0844.48736.613
117DD_DC17DG18:DC19DG20_EE0.7110.8463.6180.022-0.04929.3311.683-1.3993.617-0.098-0.04329.331
12DD_DG2DC3:DG34DC35_EE-0.288-0.3963.3681.8442.03735.243-0.960.7533.3213.359-3.0435.347
19DD_DG9DC10:DG27DC28_EE0.272-0.4333.250.4923.69830.613-1.526-0.4183.186.971-0.92830.834
11DD_DT1DG2:DC35DA36_EE-0.2721.2992.931-5.332.58231.7051.917-0.3813.0294.6759.6532.24
14DD_DT4DT5:DA32DA33_EE0.19-0.353.1333.279-2.14735.699-0.2720.1443.153-3.489-5.32935.907
15DD_DT5DC6:DG31DA32_EE-0.127-0.7053.559-1.078-2.04239.279-0.7820.0493.591-3.0341.60239.344
18DD_DT8DG9:DC28DA29_EE-0.7191.4673.342-5.1096.70140.3811.3090.4313.5919.5817.30441.215
114DD_DT14DA15:DT22DA23_EE0.175-0.3533.32-0.722-2.68539.702-0.202-0.3433.333-3.9481.06239.796

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.