6DO9: Base Pair Morphology Step Parameters

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As of 29-Jun-2022 number of released structures: 12153

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NDB ID: 6DO9 PDB ID: 6DO9

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	BB_A1C2:DG5DT6_CC	0.725	-1.133	3.168	-1.868	3.167	35.907	-2.254	-1.421	3.02	5.12	3.02	36.089
1	3	BB_A3U4:DA3DT4_CC	1.003	-2.168	3.277	1.801	2.914	25.114	-5.765	-1.779	3.072	6.663	-4.118	25.343
1	2	BB_C2A3:DT4DG5_CC	-0.563	-1.45	3.482	1.805	10.973	27.326	-5.143	1.484	2.671	22.101	-3.635	29.462
1	4	Bb_U4C5:DG2DA3_CC	-0.221	-1.999	3.382	0.188	4.965	33.398	-4.239	0.411	3.06	8.58	-0.324	33.755
1	5	bb_C5G6:DC1DG2_CC	0.934	-2.158	3.309	5.782	4.263	22.753	-6.601	-0.391	3.002	10.475	-14.207	23.845

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.