6DOA: Base Pair Morphology Step Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6DOA PDB ID: 6DOA

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	BB_A1C2:DG5DT6_CC	0.56	-1.297	3.19	-1.198	2.303	34.636	-2.51	-1.114	3.079	3.862	2.009	34.73
1	3	BB_A3U4:DA3DT4_CC	1.118	-2.052	3.33	2.229	2.842	25.348	-5.436	-1.891	3.17	6.436	-5.047	25.6
1	2	BB_C2A3:DT4DG5_CC	-0.267	-1.393	3.487	2.53	11.428	26.473	-5.275	1.085	2.636	23.545	-5.212	28.903
1	4	Bb_U4C5:DG2DA3_CC	-0.1	-1.732	3.383	1.894	6.228	34.949	-3.737	0.437	3.03	10.259	-3.121	35.532
1	5	bb_C5G6:DC1DG2_CC	1.031	-2.109	3.296	5.332	3.336	20.873	-6.886	-0.639	3.089	8.951	-14.303	21.79

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.