6DOB: Base Pair Morphology Step Parameters

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As of 29-Jun-2022 number of released structures: 12153

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NDB ID: 6DOB PDB ID: 6DOB

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	BB_A1C2:DG5DT6_CC	0.67	-1.097	3.173	-1.378	2.353	35.399	-2.128	-1.292	3.069	3.862	2.262	35.501
1	3	BB_A3U4:DA3DT4_CC	1.097	-2.138	3.235	1.178	2.551	25.296	-5.56	-2.163	3.055	5.802	-2.68	25.449
1	2	BB_C2A3:DT4DG5_CC	-0.437	-1.42	3.533	2.524	11.437	26.557	-5.335	1.424	2.655	23.498	-5.185	28.982
1	4	Bb_U4C5:DG2DA3_CC	-0.211	-1.937	3.397	1.321	6.261	33.562	-4.275	0.564	2.987	10.721	-2.263	34.149
1	5	bb_C5G6:DC1DG2_CC	0.845	-2.136	3.366	5.984	4.276	21.63	-6.927	0.008	3.014	10.993	-15.384	22.832

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.