6DOC: Base Pair Morphology Step Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6DOC PDB ID: 6DOC

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	BB_A1C2:DG5DT6_CC	0.646	-1.165	3.192	-0.671	3.384	35.158	-2.398	-1.16	3.058	5.585	1.107	35.321
1	3	BB_A3U4:DA3DT4_CC	1.105	-2.061	3.296	3.517	1.684	24.416	-5.332	-1.499	3.273	3.949	-8.248	24.72
1	2	BB_C2A3:DT4DG5_CC	-0.333	-1.371	3.574	2.655	12.609	25.439	-5.661	1.282	2.572	26.57	-5.595	28.468
1	4	Bb_U4C5:DG2DA3_CC	0.131	-1.628	3.47	2.054	6.133	35.656	-3.499	0.084	3.159	9.915	-3.321	36.219
1	5	bb_C5G6:DC1DG2_CC	0.886	-2.072	3.235	5.338	6.535	19.661	-8.053	-0.375	2.57	18.099	-14.783	21.379

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.