6DOE: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6DOE PDB ID: 6DOE

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	B_A1:DT6_C	0.142	-0.137	-0.263	-7.394	-7.95	-0.197
1	3	B_A3:DT4_C	0.101	-0.138	-0.242	-7.893	-10.555	2.245
1	2	B_C2:DG5_C	0.183	-0.187	-0.015	1.912	-10.782	2.147
1	4	B_U4:DA3_C	0.009	-0.181	-0.059	-4.433	-13.209	2.423
1	5	b_C5:DG2_C	0.149	-0.246	0.118	-9.743	-4.066	0.638
1	6	b_G6:DC1_C	-0.194	-0.21	-0.097	-4.106	-6.786	-2.359

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.