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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
6DOE
PDB ID:
6DOE
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
1
B_A1:DT6_C
0.142
-0.137
-0.263
-7.394
-7.95
-0.197
1
3
B_A3:DT4_C
0.101
-0.138
-0.242
-7.893
-10.555
2.245
1
2
B_C2:DG5_C
0.183
-0.187
-0.015
1.912
-10.782
2.147
1
4
B_U4:DA3_C
0.009
-0.181
-0.059
-4.433
-13.209
2.423
1
5
b_C5:DG2_C
0.149
-0.246
0.118
-9.743
-4.066
0.638
1
6
b_G6:DC1_C
-0.194
-0.21
-0.097
-4.106
-6.786
-2.359
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.