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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
6DOE
PDB ID:
6DOE
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
1
BB_A1C2:DG5DT6_CC
0.558
-1.189
3.211
-1.988
3.499
35.674
-2.41
-1.178
3.05
5.69
3.232
35.893
1
3
BB_A3U4:DA3DT4_CC
1.104
-2.03
3.34
2.5
1.422
24.93
-5.1
-1.787
3.314
3.279
-5.768
25.093
1
2
BB_C2A3:DT4DG5_CC
-0.307
-1.336
3.574
2.503
12.668
25.291
-5.646
1.204
2.581
26.819
-5.298
28.349
1
4
Bb_U4C5:DG2DA3_CC
0.099
-1.684
3.414
1.959
5.456
35.813
-3.475
0.117
3.133
8.801
-3.16
36.264
1
5
bb_C5G6:DC1DG2_CC
0.938
-2.115
3.261
6.107
6.114
20.314
-7.744
-0.236
2.683
16.41
-16.391
22.058
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.