6DOE: Base Pair Morphology Step Parameters

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NDB ID: 6DOE PDB ID: 6DOE

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	BB_A1C2:DG5DT6_CC	0.558	-1.189	3.211	-1.988	3.499	35.674	-2.41	-1.178	3.05	5.69	3.232	35.893
1	3	BB_A3U4:DA3DT4_CC	1.104	-2.03	3.34	2.5	1.422	24.93	-5.1	-1.787	3.314	3.279	-5.768	25.093
1	2	BB_C2A3:DT4DG5_CC	-0.307	-1.336	3.574	2.503	12.668	25.291	-5.646	1.204	2.581	26.819	-5.298	28.349
1	4	Bb_U4C5:DG2DA3_CC	0.099	-1.684	3.414	1.959	5.456	35.813	-3.475	0.117	3.133	8.801	-3.16	36.264
1	5	bb_C5G6:DC1DG2_CC	0.938	-2.115	3.261	6.107	6.114	20.314	-7.744	-0.236	2.683	16.41	-16.391	22.058

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.