6DOK: Base Pair Morphology Step Parameters

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As of 29-Jun-2022 number of released structures: 12153

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NDB ID: 6DOK PDB ID: 6DOK

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	BB_A1C2:DG5DT6_CC	0.707	-1.08	3.213	-1.745	4.072	35.475	-2.323	-1.393	3.037	6.651	2.85	35.741
1	3	BB_A3U4:DA3DT4_CC	0.967	-2.169	3.335	2.667	2.941	25.092	-5.777	-1.433	3.148	6.715	-6.089	25.399
1	2	BB_C2A3:DT4DG5_CC	-0.442	-1.429	3.491	3.411	11.791	26.782	-5.272	1.58	2.572	23.923	-6.921	29.414
1	4	Bb_U4C5:DG2DA3_CC	0.048	-1.824	3.4	0.619	3.874	33.328	-3.801	0.02	3.174	6.726	-1.075	33.552
1	5	bb_C5G6:DC1DG2_CC	0.984	-1.987	3.141	5.078	7.135	22.31	-6.876	-0.886	2.551	17.594	-12.521	23.947

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.