A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
Search for released structures

NDB ID: 6DOM  PDB ID: 6DOM 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11BB_A1C2:DG5DT6_CC0.679-1.063.221-2.1043.1935.577-2.169-1.3983.0745.2023.4335.775
13BB_A3U4:DA3DT4_CC1.012-2.2233.2622.3542.62324.752-5.898-1.6543.0946.08-5.45724.998
12BB_C2A3:DT4DG5_CC-0.456-1.4553.4872.26311.48427.831-5.0851.3282.64822.648-4.46430.147
14Bb_U4C5:DG2DA3_CC-0.11-1.9313.3790.5444.83232.82-4.1870.2833.0698.493-0.95633.168
15bb_C5G6:DC1DG2_CC0.938-2.0523.2366.1216.3122.976-6.656-0.4212.73815.148-14.69524.579

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.