6DOM: Base Pair Morphology Step Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6DOM PDB ID: 6DOM

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	BB_A1C2:DG5DT6_CC	0.679	-1.06	3.221	-2.104	3.19	35.577	-2.169	-1.398	3.074	5.202	3.43	35.775
1	3	BB_A3U4:DA3DT4_CC	1.012	-2.223	3.262	2.354	2.623	24.752	-5.898	-1.654	3.094	6.08	-5.457	24.998
1	2	BB_C2A3:DT4DG5_CC	-0.456	-1.455	3.487	2.263	11.484	27.831	-5.085	1.328	2.648	22.648	-4.464	30.147
1	4	Bb_U4C5:DG2DA3_CC	-0.11	-1.931	3.379	0.544	4.832	32.82	-4.187	0.283	3.069	8.493	-0.956	33.168
1	5	bb_C5G6:DC1DG2_CC	0.938	-2.052	3.236	6.121	6.31	22.976	-6.656	-0.421	2.738	15.148	-14.695	24.579

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.