6DON: Base Pair Morphology Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6DON PDB ID: 6DON

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	B_A1:DT6_C	0.131	-0.122	0.015	-3.098	-7.341	0.049
1	3	B_A3:DT4_C	0.05	-0.09	-0.212	-5.621	-11.039	1.95
1	2	B_C2:DG5_C	0.06	-0.165	0.105	2.961	-12.341	0.869
1	4	B_U4:DA3_C	-0.015	-0.194	-0.053	-3.413	-8.674	1.206
1	5	b_C5:DG2_C	0.058	-0.178	0.187	-9.05	-7.211	0.213
1	6	b_G6:DC1_C	-0.216	-0.155	0.112	-3.582	-9.497	-0.927

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.