6DOO: Base Pair Morphology Step Parameters

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As of 29-Jun-2022 number of released structures: 12153

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NDB ID: 6DOO PDB ID: 6DOO

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	BB_A1C2:DG5DT6_CC	0.774	-1.099	3.155	-1.156	3.097	34.885	-2.265	-1.45	3.023	5.151	1.922	35.036
1	3	BB_A3U4:DA3DT4_CC	1.023	-2.211	3.255	1.882	3.378	25.393	-5.89	-1.791	3.007	7.629	-4.249	25.681
1	2	BB_C2A3:DT4DG5_CC	-0.522	-1.416	3.5	1.365	11.354	28.265	-4.937	1.262	2.714	22.139	-2.661	30.447
1	4	Bb_U4C5:DG2DA3_CC	-0.264	-1.983	3.426	0.468	4.873	32.498	-4.343	0.547	3.1	8.646	-0.831	32.855
1	5	bb_C5G6:DC1DG2_CC	0.941	-2.095	3.257	5.547	4.431	23.008	-6.407	-0.527	2.949	10.783	-13.5	24.065

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.