6DOP: Base Pair Morphology Step Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6DOP PDB ID: 6DOP

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	BB_A1C2:DG5DT6_CC	0.751	-1.034	3.244	-2.452	4.435	35.242	-2.314	-1.572	3.038	7.279	4.024	35.593
1	3	BB_A3U4:DA3DT4_CC	0.969	-2.165	3.309	3.108	1.555	24.327	-5.572	-1.311	3.262	3.666	-7.326	24.57
1	2	BB_C2A3:DT4DG5_CC	-0.56	-1.416	3.477	3.786	12.193	26.982	-5.208	1.851	2.516	24.469	-7.597	29.8
1	4	Bb_U4C5:DG2DA3_CC	0.169	-1.896	3.354	0.44	4.28	33.4	-3.965	-0.222	3.096	7.409	-0.762	33.668
1	5	bb_C5G6:DC1DG2_CC	0.994	-2.032	3.221	6.506	6.441	21.196	-7.202	-0.344	2.679	16.551	-16.717	23.068

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.