6DOT: Base Pair Morphology Step Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6DOT PDB ID: 6DOT

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	BB_A1C2:DG5DT6_CC	0.667	-1.117	3.206	-1.989	4.306	34.958	-2.453	-1.383	3.01	7.128	3.292	35.269
1	3	BB_A3U4:DA3DT4_CC	0.892	-2.206	3.347	2.941	1.872	25.078	-5.584	-1.169	3.258	4.284	-6.731	25.315
1	2	BB_C2A3:DT4DG5_CC	-0.436	-1.487	3.412	3.211	12.142	26.745	-5.358	1.502	2.452	24.6	-6.506	29.498
1	4	Bb_U4C5:DG2DA3_CC	0.01	-1.898	3.284	-0.463	4.477	32.948	-4.041	-0.092	3.007	7.848	0.811	33.246
1	5	bb_C5G6:DC1DG2_CC	0.951	-1.958	3.227	5.464	6.41	23.39	-6.373	-0.659	2.75	15.194	-12.952	24.84

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.