A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 6DOT  PDB ID: 6DOT 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11BB_A1C2:DG5DT6_CC0.667-1.1173.206-1.9894.30634.958-2.453-1.3833.017.1283.29235.269
13BB_A3U4:DA3DT4_CC0.892-2.2063.3472.9411.87225.078-5.584-1.1693.2584.284-6.73125.315
12BB_C2A3:DT4DG5_CC-0.436-1.4873.4123.21112.14226.745-5.3581.5022.45224.6-6.50629.498
14Bb_U4C5:DG2DA3_CC0.01-1.8983.284-0.4634.47732.948-4.041-0.0923.0077.8480.81133.246
15bb_C5G6:DC1DG2_CC0.951-1.9583.2275.4646.4123.39-6.373-0.6592.7515.194-12.95224.84

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.