6DOU: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6DOU PDB ID: 6DOU

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	B_A1:DT6_C	0.223	-0.185	-0.017	-5.829	-6.004	0.42
1	3	B_A3:DT4_C	0.086	-0.155	-0.238	-5.639	-10.133	2.306
1	2	B_C2:DG5_C	0.108	-0.193	0.093	2.984	-13.738	2.167
1	4	B_U4:DA3_C	0.063	-0.176	-0.158	-0.438	-13.045	3.005
1	5	b_C5:DG2_C	0.087	-0.245	0.212	-9.334	-6.106	0.38
1	6	b_G6:DC1_C	-0.132	-0.167	0.076	-3.433	-9.793	-0.112

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.