6DOW: Base Pair Morphology Parameters

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As of 29-Jun-2022 number of released structures: 12153

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NDB ID: 6DOW PDB ID: 6DOW

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	B_A1:DT6_C	0.15	-0.154	-0.017	-6.163	-6.321	-0.358
1	3	B_A3:DT4_C	0.124	-0.138	-0.338	-5.968	-10.224	1.952
1	2	B_C2:DG5_C	0.101	-0.123	-0.038	0.432	-8.658	3.982
1	4	B_U4:DA3_C	-0.023	-0.145	-0.02	-2.566	-13.76	5.426
1	5	b_C5:DG2_C	0.217	-0.226	0.167	-9.382	-4.874	1.022
1	6	b_G6:DC1_C	-0.116	-0.202	-0.053	-5.317	-10.519	-1.976

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.