6DP1: Base Pair Morphology Step Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6DP1 PDB ID: 6DP1

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	BB_A1C2:DG5DT6_CC	0.687	-1.078	3.24	-1.695	3.597	35.34	-2.274	-1.365	3.084	5.902	2.782	35.556
1	3	BB_A3U4:DA3DT4_CC	0.963	-2.166	3.388	2.629	2.378	25.052	-5.651	-1.42	3.254	5.447	-6.022	25.298
1	2	BB_C2A3:DT4DG5_CC	-0.38	-1.47	3.445	3.669	12.203	26.223	-5.468	1.521	2.458	25.098	-7.545	29.106
1	4	Bb_U4C5:DG2DA3_CC	0.198	-1.733	3.299	1.574	3.63	34.279	-3.475	-0.093	3.111	6.134	-2.66	34.5
1	5	bb_C5G6:DC1DG2_CC	1.031	-2.01	3.14	4.868	7.216	21.594	-7.213	-1.054	2.515	18.33	-12.365	23.262

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.