6DP6: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6DP6 PDB ID: 6DP6

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	B_A1:DT6_C	0.168	-0.188	0.037	-3.11	-5.63	-0.547
1	3	B_A3:DT4_C	0.079	-0.121	-0.214	-5.128	-11.331	1.552
1	2	B_C2:DG5_C	0.162	-0.172	0.053	4.061	-12.612	0.05
1	4	B_U4:DA3_C	0.036	-0.157	0.022	-2.136	-12.888	3.953
1	5	b_C5:DG2_C	0.163	-0.196	0.126	-6.238	-10.446	0.231
1	6	b_G6:DC1_C	-0.035	-0.162	0.01	-4.621	-7.362	-1.196

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.