A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 6DPB  PDB ID: 6DPB 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11B_A1:DT6_C0.283-0.212-0.011-4.535-5.914-0.762
13B_A3:DT4_C0.14-0.141-0.22-7.085-12.9991.969
12B_C2:DG5_C0.076-0.1920.0053.856-11.3051.926
14B_U4:DA3_C0.058-0.207-0.027-5.879-10.9063.859
15b_C5:DG2_C-0.016-0.1660.044-13.596-2.2340.281
16b_G6:DC1_C-0.223-0.1640.062-4.498-8.855-1.01

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.