A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
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NDB ID: 6DPB  PDB ID: 6DPB 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11BB_A1C2:DG5DT6_CC0.674-1.0593.184-0.9383.31634.505-2.263-1.2683.0535.5731.57634.672
13BB_A3U4:DA3DT4_CC1.123-2.1083.373.3732.46425.15-5.499-1.5593.2725.609-7.67825.489
12BB_C2A3:DT4DG5_CC-0.323-1.4393.4962.18712.33527.029-5.3241.0762.57524.772-4.39129.742
14Bb_U4C5:DG2DA3_CC0.147-1.563.4824.3674.35234.744-3.2460.433.2627.218-7.24335.27
15bb_C5G6:DC1DG2_CC1.025-1.9133.163.9048.220.202-7.74-1.3582.36521.997-10.47422.13

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.