6DPD: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6DPD PDB ID: 6DPD

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	B_A1:DT6_C	0.174	-0.162	-0.184	0.284	-4.049	-3.41
1	3	B_A3:DT4_C	0.116	-0.127	-0.212	-5.606	-10.959	2.026
1	2	B_C2:DG5_C	0.058	-0.2	-0.053	7.56	-14.332	0.152
1	4	B_U4:DA3_C	0.061	-0.191	-0.153	-3.209	-10.617	3.838
1	5	b_C5:DG2_C	0.036	-0.183	0.105	-6.484	-9.338	1.316
1	6	b_G6:DC1_C	-0.252	-0.155	0.04	-7.379	-11.512	-1.115

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.