A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 6DPD  PDB ID: 6DPD 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11B_A1:DT6_C0.174-0.162-0.1840.284-4.049-3.41
13B_A3:DT4_C0.116-0.127-0.212-5.606-10.9592.026
12B_C2:DG5_C0.058-0.2-0.0537.56-14.3320.152
14B_U4:DA3_C0.061-0.191-0.153-3.209-10.6173.838
15b_C5:DG2_C0.036-0.1830.105-6.484-9.3381.316
16b_G6:DC1_C-0.252-0.1550.04-7.379-11.512-1.115

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.