6DPD: Base Pair Morphology Step Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6DPD PDB ID: 6DPD

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	BB_A1C2:DG5DT6_CC	0.795	-0.853	3.164	-2.994	1.386	35.252	-1.597	-1.726	3.054	2.282	4.93	35.401
1	3	BB_A3U4:DA3DT4_CC	1.133	-2.23	3.319	3.918	4.127	25.015	-6.176	-1.459	3.056	9.375	-8.898	25.644
1	2	BB_C2A3:DT4DG5_CC	-0.27	-1.451	3.601	0.483	11.676	28.421	-5.079	0.607	2.796	22.61	-0.935	30.683
1	4	Bb_U4C5:DG2DA3_CC	-0.153	-1.802	3.429	1.059	4.62	31.955	-4.066	0.465	3.138	8.335	-1.91	32.296
1	5	bb_C5G6:DC1DG2_CC	0.91	-1.955	3.372	5.936	7.095	21.91	-7.032	-0.298	2.761	17.687	-14.796	23.761

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.