A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 6DPD  PDB ID: 6DPD 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11BB_A1C2:DG5DT6_CC0.795-0.8533.164-2.9941.38635.252-1.597-1.7263.0542.2824.9335.401
13BB_A3U4:DA3DT4_CC1.133-2.233.3193.9184.12725.015-6.176-1.4593.0569.375-8.89825.644
12BB_C2A3:DT4DG5_CC-0.27-1.4513.6010.48311.67628.421-5.0790.6072.79622.61-0.93530.683
14Bb_U4C5:DG2DA3_CC-0.153-1.8023.4291.0594.6231.955-4.0660.4653.1388.335-1.9132.296
15bb_C5G6:DC1DG2_CC0.91-1.9553.3725.9367.09521.91-7.032-0.2982.76117.687-14.79623.761

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.