6DPL: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6DPL PDB ID: 6DPL

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	B_A1:DT6_C	0.154	-0.15	-0.174	-9.024	-4.401	-2.322
1	3	B_A3:DT4_C	0.122	-0.153	-0.219	-5.397	-10.234	2.341
1	2	B_C2:DG5_C	0.089	-0.19	0.034	-1.883	-9.235	2.15
1	4	B_U4:DA3_C	0.022	-0.456	0.153	0.022	-10.406	1.626
1	5	b_C5:DG2_C	0.174	-0.239	0.176	-6.974	-10.907	0.323
1	6	b_G6:DC1_C	-0.199	-0.111	-0.082	-7.116	-6.883	-1.208

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.