6DPL: Base Pair Morphology Step Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6DPL PDB ID: 6DPL

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	BB_A1C2:DG5DT6_CC	0.636	-1.346	3.221	-1.617	4.046	35.401	-2.76	-1.262	3.023	6.623	2.647	35.659
1	3	BB_A3U4:DA3DT4_CC	0.982	-1.832	3.199	-1.349	2.671	26.235	-4.682	-2.489	2.948	5.861	2.96	26.402
1	2	BB_C2A3:DT4DG5_CC	-0.322	-1.408	3.409	3.408	11.425	25.32	-5.491	1.434	2.489	24.412	-7.283	27.946
1	4	Bb_U4C5:DG2DA3_CC	-0.207	-2.092	3.333	1.231	4.249	34.666	-4.113	0.527	3.055	7.094	-2.056	34.939
1	5	bb_C5G6:DC1DG2_CC	0.947	-2.156	3.378	6.311	4.63	23.687	-6.392	-0.288	3.054	10.905	-14.863	24.929

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.