A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 6DPN  PDB ID: 6DPN 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11B_A1:DT6_C0.202-0.115-0.016-4.313-4.6261.689
13B_A3:DT4_C0.155-0.113-0.23-8.418-11.0532.164
12B_C2:DG5_C0.142-0.2290.0961.882-13.9333.123
14B_U4:DA3_C-0.022-0.147-0.068-4.133-9.3020.867
15b_C5:DG2_C0.054-0.210.188-9.007-6.3060.909
16b_G6:DC1_C-0.219-0.205-0.019-5.665-6.221-1.145

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.