A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 6DPN  PDB ID: 6DPN 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11BB_A1C2:DG5DT6_CC0.614-1.1363.208-1.183.80335.424-2.386-1.1683.0526.2261.93235.64
13BB_A3U4:DA3DT4_CC0.911-2.1173.2522.8331.83724.744-5.438-1.2733.1724.261-6.57124.97
12BB_C2A3:DT4DG5_CC-0.431-1.4383.5123.70412.13225.789-5.5591.6812.51125.323-7.73228.693
14Bb_U4C5:DG2DA3_CC0.117-1.8683.370.1273.90433.839-3.809-0.183.1426.68-0.21734.057
15bb_C5G6:DC1DG2_CC0.963-2.0653.2095.8016.89422.639-6.903-0.5952.63616.735-14.08224.345

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.