6DPO: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6DPO PDB ID: 6DPO

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	B_A1:DT6_C	0.124	-0.092	-0.057	-6.575	-5.363	1.693
1	3	B_A3:DT4_C	0.133	-0.155	-0.233	-7.711	-9.375	1.513
1	2	B_C2:DG5_C	0.076	-0.199	0.104	0.078	-13.059	2.441
1	4	B_U4:DA3_C	-0.074	-0.178	0.051	-2.728	-8.595	0.179
1	5	b_C5:DG2_C	0.05	-0.188	0.199	-6.929	-6.515	0.879
1	6	b_G6:DC1_C	-0.295	-0.255	-0.051	-5.272	-5.374	-4.257

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.