A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
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NDB ID: 6DPP  PDB ID: 6DPP 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11B_A1:DT6_C0.091-0.16-0.166-6.521-4.73-0.691
13B_A3:DT4_C0.062-0.132-0.227-5.335-10.2692.392
12B_C2:DG5_C0.073-0.144-0.0432.252-10.0521.906
14B_U4:DA3_C0.109-0.19-0.0160.533-15.235.635
15b_C5:DG2_C0.257-0.1810.136-7.39-8.5841.397
16b_G6:DC1_C-0.123-0.175-0.067-5.906-6.427-1.299

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.