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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
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NDB ID:
6DPP
PDB ID:
6DPP
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
1
B_A1:DT6_C
0.091
-0.16
-0.166
-6.521
-4.73
-0.691
1
3
B_A3:DT4_C
0.062
-0.132
-0.227
-5.335
-10.269
2.392
1
2
B_C2:DG5_C
0.073
-0.144
-0.043
2.252
-10.052
1.906
1
4
B_U4:DA3_C
0.109
-0.19
-0.016
0.533
-15.23
5.635
1
5
b_C5:DG2_C
0.257
-0.181
0.136
-7.39
-8.584
1.397
1
6
b_G6:DC1_C
-0.123
-0.175
-0.067
-5.906
-6.427
-1.299
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.