6DPP: Base Pair Morphology Step Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6DPP PDB ID: 6DPP

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	BB_A1C2:DG5DT6_CC	0.682	-1.182	3.196	-0.667	2.939	35.06	-2.377	-1.224	3.077	4.867	1.105	35.185
1	3	BB_A3U4:DA3DT4_CC	1.15	-2.048	3.261	1.568	3.572	26.475	-5.321	-2.092	3.025	7.746	-3.4	26.756
1	2	BB_C2A3:DT4DG5_CC	-0.35	-1.4	3.506	1.788	10.676	26.532	-5.225	1.109	2.72	22.126	-3.706	28.619
1	4	Bb_U4C5:DG2DA3_CC	-0.371	-1.899	3.455	0.663	6.449	33.662	-4.239	0.734	3.042	11.009	-1.132	34.263
1	5	bb_C5G6:DC1DG2_CC	0.885	-2.112	3.378	5.761	3.397	22.093	-6.492	-0.157	3.148	8.613	-14.609	23.071

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.