6DWY: Base Pair Morphology Parameters

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NDB ID: 6DWY PDB ID: 6DWY

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	B_DA1:DT16_C	0.985	0.3	-0.691	-22.97	-14.713	-0.585
1	3	B_DA3:DT14_C	0.363	-0.59	0.537	14.89	-0.447	-0.787
1	5	B_DA5:DT12_C	-0.009	0.011	0.198	3.397	-2.84	2.168
1	6	B_DA6:DT11_C	0.403	-0.309	0.158	2.72	0.82	-6.935
1	8	B_DA8:DT9_C	0.575	-0.192	0.424	18.128	-8.256	-13.152
1	9	B_DA9:DT8_C	-0.125	-0.354	0.444	18.037	-18.452	-8.914
1	11	B_DA11:DT6_C	0.584	0.157	0.569	2.633	-10.558	11.275
1	12	B_DA12:DT5_C	0.995	0.464	0.773	5.568	-8.351	-8.704
1	14	B_DA14:DT3_C	0.406	-0.286	0.662	4.572	-21.956	1.616
1	15	B_DA15:DT2_C	0.905	0.051	0.443	6.519	-21.064	-8.22
1	7	B_DC7:DG10_C	0.35	-0.316	0.259	12.168	-6.893	-3.704
1	10	B_DC10:DG7_C	0.188	-0.421	0.408	-4.506	-13.137	-2.47
1	13	B_DC13:DG4_C	0.074	0.146	-0.103	7.825	-3.985	7.978
1	2	B_DG2:DC15_C	0.12	-0.123	1.832	24.505	7.193	-0.038
1	4	B_DG4:DC13_C	-0.395	-0.18	0.214	1.356	-2.611	0.945
1	16	B_DG16:DC1_C	1.786	0.574	1.377	9.381	-28.784	25.936
1	19	C_DA22:DT4_D	0.048	0.04	0.346	4.165	-5.499	-9.582
1	18	C_DC21:DG5_D	-0.191	-0.186	0.636	-3.372	-15.102	-5.101
1	20	C_DC23:DG3_D	0.821	-0.439	0.116	2.234	-8.206	-12.982
1	22	C_DC25:DG1_D	2.218	-0.716	1.313	23.42	-35.615	-0.671
1	21	C_DG24:DC2_D	-0.096	0.311	-0.039	3.095	-5.112	11.457
1	17	C_DT20:DA6_D	0.793	0.089	2.055	-21.4	-7.314	6.227

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.