6DWY: Base Pair Morphology Step Parameters

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NDB ID: 6DWY PDB ID: 6DWY

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	BB_DA1DG2:DC15DT16_CC	0.104	-0.564	2.037	-27.401	10.575	26.8	-1.572	-2.069	1.176	17.468	45.26	39.56
1	3	BB_DA3DG4:DC13DT14_CC	-1.062	-1.932	3.699	-3.608	4.717	25.197	-5.754	1.269	3.402	10.626	8.127	25.877
1	5	BB_DA5DA6:DT11DT12_CC	-0.721	-0.658	3.408	-0.999	-2.564	33.59	-0.696	1.073	3.466	-4.428	1.726	33.699
1	6	BB_DA6DC7:DG10DT11_CC	0.43	-0.977	3.172	-1.698	-2.848	32.182	-1.26	-1.066	3.218	-5.12	3.053	32.348
1	8	BB_DA8DA9:DT8DT9_CC	0.468	-0.764	3.161	-3.199	0.183	28.213	-1.597	-1.66	3.085	0.374	6.536	28.391
1	9	BB_DA9DC10:DG7DT8_CC	1.147	-1.327	3.754	1.805	-5.569	33.623	-1.211	-1.615	3.971	-9.538	-3.091	34.114
1	11	BB_DA11DA12:DT5DT6_CC	-1.187	-0.811	3.024	-3.565	-4.268	34.98	-0.732	1.45	3.199	-7.046	5.884	35.406
1	12	BB_DA12DC13:DG4DT5_CC	1.644	-0.986	3.269	7.586	-1.13	26.833	-1.756	-1.465	3.626	-2.374	-15.938	27.889
1	14	BB_DA14DA15:DT2DT3_CC	-1.05	-0.35	3.153	-0.27	2.095	37.746	-0.799	1.587	3.137	3.236	0.416	37.803
1	15	BB_DA15DG16:DC1DT2_CC	1.522	-0.486	3.286	-3.494	-9.198	41.115	0.273	-2.473	3.184	-12.876	4.891	42.227
1	7	BB_DC7DA8:DT9DG10_CC	-1.709	-0.248	3.245	-4.223	0.001	40.159	-0.36	1.992	3.4	0.001	6.129	40.371
1	10	BB_DC10DA11:DT6DG7_CC	0.074	-0.17	3.177	-1.097	1.398	41.731	-0.38	-0.215	3.167	1.962	1.539	41.768
1	13	BB_DC13DA14:DT3DG4_CC	-0.298	-0.407	3.421	-4.196	2.065	39.39	-0.853	-0.074	3.408	3.05	6.198	39.656
1	2	BB_DG2DA3:DT14DC15_CC	-0.312	-1.47	3.512	3.157	15.093	34.71	-4.169	0.88	2.635	23.893	-4.998	37.885
1	4	BB_DG4DA5:DT12DC13_CC	-0.019	-1.07	3.265	0.133	5.853	29.627	-3.206	0.063	3.002	11.307	-0.256	30.187
1	18	CC_DA22DC23:DG3DT4_DD	-0.53	-0.497	3.595	-2.482	-0.541	37.042	-0.7	0.466	3.629	-0.85	3.902	37.126
1	17	CC_DC21DA22:DT4DG5_DD	-0.749	-0.548	2.996	0.173	10.798	36.003	-2.113	1.184	2.722	17.004	-0.273	37.536
1	19	CC_DC23DG24:DC2DG3_DD	0.997	0.232	3.477	1.857	-0.456	34.703	0.463	-1.366	3.52	-0.764	-3.111	34.754
1	20	CC_DG24DC25:DG1DC2_DD	-1.0	0.455	3.169	-14.7	1.923	42.917	0.415	-0.041	3.339	2.54	19.412	45.291
1	16	CC_DT20DC21:DG5DA6_DD	-1.591	-0.378	2.726	6.736	-10.22	28.393	0.881	4.039	2.295	-19.718	-12.996	30.869

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.